Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04735 ATGGCTATGTTTATTGCTGATGATAATCTCTTTTCAAAAATTGAAGAAATTAATTCTGATAAGTCAAATTGGAATTGTAAGGCTAAGATAATAAGACTTTGGGCTGTATCTGATTTCAATCGACCAAACATCCCTTTTTCTATTGAAATGGTTTTAATGGATTCTGAGGGAGCTAAAATTCATGCTACTGTTCGAAAAACTCTTATTTACAAATTTAAGGATGACTTGAGAGAGGGAAAGGTTTATGCTTTTGAAAATATGGGAGTTGCAACAAATGGTGGAGCTTATCGGACCACTAACCACCGTTATAAGTTAAATTTCCAGTTCACATCTATTGTTCAAATTCTTTCTAACCAAGACATTGTTATGTCTCCATTTAACTTTACTCCAATTGCTACTATTGTTGGAGGGTCTTATGACAATGATTATTTAGTTGATGTGATTGGGATGTTGACTGGTGTTGGTAGTGAGCGTGAAGTAACCAACCAAAATGGAACTACCACAAAACTTAATGTTATTGAGTTAGAGGCTGATGGGCATAAGATACAATGCACATTGTTTGGGGCTTATGTTGATGTGCTCAATGGTTTTCTTGGAGCTGGAGAAGTCCAAAATGTTGTTGTCATCATGCAGCTTGCAAAGGCCAAAAATTTTCAAGACAAAATTCACATCCAAAACTGCATGAATTGTAGCGTTTTGTTATTTAACCCTACATGTGAAGAAAGTGTTAGTTTCAGGGCAAGGCAAGAAGAAGCTGTTGAAACTCTAACTCCTTTGACTTTAACCCAACTCAATGTTGAGACCCAAGTTCTTCCTGTTGATGAGTTTTTGTTCAATACCCCAAGAAGCACTCTGCAGGCTCTTAAAGATGCCACTACTATAATTTCTTTTTTTTTCATTGCTGTCATCCCTGATTCAAGGATGTTTTATTGTGAGAAGTGCAATAAACATGTGTCTAGAGTTTTTCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTTTTGTCATATTTGATAGAGATGCAAGTTTGCTTTTCAACATGGCTTGTGCTGATATGATTGAGGCACCAGGAGGGGCTGGTGGTGCTGGAGGTTTGCCTCCTCAAATTGCTGATATGGTTGAAAAAACTTGGTTGTTTAAGGTTGAGACCAAACCTACCTTTAATCCTAGATTTGAACAATCCTTTCGTGTTAGAAAGATATGCACGGATGTAGCCATCATCAATCAGTTTAAAGCAAAGTGGGACAATGAAGAGGTAACTTTTATGAAAAATACTAATGAGAATGGTTCTTTAAGTACTCTATTGCTGAAAGGGAAAGATGTTTTAGTTGATGGTTCAACAAATATCTTATCTCAGGACTTTGAGAGTGGGTCTGACAGTTCTGGAAAAGGGAAGGGGCTGATTCTTGAGGGAAAACCTGTTGAGGTTACTCAGGATTTGATGGAAAAGTTTTCTACAGCTGCTGTGAATCTTGCTGATGATTCACTTGAAATTATAACAGGAGACATTGTGCATGCTGTGGACAAAGGGAAAGGTTTTGTTGTCAATTTAGATGATGAGGAAGTTTCATTTGAGAAAGGCAAATCTGTTGTTGTAAAGTTAGATGATGACAAAGTTGCAGTTGACCAAGGGAAACTTGCTGTTGTCAACTTAAATGATGGAAAAGTTGCTTTTGACAAAGGGAAACAAGCTGTTGTGAAGTTAGCTGATGAGGAACTTGCTAAGGTGCAAGTTGTTAGTGAAGAGAAGATATGTGATGGTCCAACTAAGAGATTGAAGAAAAAATCTGCAGGCAAGAGAGTTTCACCTACACCACAAGATGAAGATGATAATACTCCCATAAAGCTTTTGAAGAGGGCTATTAAGATTGAAAAAATTGCTTAG 1902 0.3712 MAMFIADDNLFSKIEEINSDKSNWNCKAKIIRLWAVSDFNRPNIPFSIEMVLMDSEGAKIHATVRKTLIYKFKDDLREGKVYAFENMGVATNGGAYRTTNHRYKLNFQFTSIVQILSNQDIVMSPFNFTPIATIVGGSYDNDYLVDVIGMLTGVGSEREVTNQNGTTTKLNVIELEADGHKIQCTLFGAYVDVLNGFLGAGEVQNVVVIMQLAKAKNFQDKIHIQNCMNCSVLLFNPTCEESVSFRARQEEAVETLTPLTLTQLNVETQVLPVDEFLFNTPRSTLQALKDATTIISFFFIAVIPDSRMFYCEKCNKHVSRVFPRFCIKVRVMDHTDSATFVIFDRDASLLFNMACADMIEAPGGAGGAGGLPPQIADMVEKTWLFKVETKPTFNPRFEQSFRVRKICTDVAIINQFKAKWDNEEVTFMKNTNENGSLSTLLLKGKDVLVDGSTNILSQDFESGSDSSGKGKGLILEGKPVEVTQDLMEKFSTAAVNLADDSLEIITGDIVHAVDKGKGFVVNLDDEEVSFEKGKSVVVKLDDDKVAVDQGKLAVVNLNDGKVAFDKGKQAVVKLADEELAKVQVVSEEKICDGPTKRLKKKSAGKRVSPTPQDEDDNTPIKLLKRAIKIEKIA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04735 633 MobiDBLite consensus disorder prediction 595 619 - -
Trre13g04735 633 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
Trre13g04735 633 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre13g04735 633 CDD RPA1_DBD_B_like 146 249 - -
Trre13g04735 633 Gene3D - 10 115 IPR012340 -
Trre13g04735 633 Gene3D - 300 417 IPR012340 -
Trre13g04735 633 SUPERFAMILY Nucleic acid-binding proteins 11 119 IPR012340 -
Trre13g04735 633 Pfam Replication factor-A C terminal domain 307 411 IPR013955 -
Trre13g04735 633 CDD RPA1_DBD_A_like 27 113 - -
Trre13g04735 633 SUPERFAMILY Nucleic acid-binding proteins 302 411 IPR012340 -
Trre13g04735 633 Gene3D - 119 257 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04735 Trre-Chr13 54208028 54210915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04735 46 406 Core DNA Replication Machinery Family AT5G08020 20.907 4.79e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04735 - - tpra:123915045 698.353