Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04732 ATGAAATTCTGCAAAAAATACCAAGAATACATGCAAGGCCAGAAGCAAAAGAAGCTTCCTGAGGTTGGATTCAAGAAGCTCAAAAAAATCTTGAAGAAGTGCCGTAGAGATTCTTCTCAATCCCATAAACCATCCCAAACATGTCCCAACCAATGCACAGTGTGTGATGGAACCTTCTTCCCTTCACTTCTTAGTGAAATGTCTGAGATAGTTGGATGCTTTAATGAACGTGCACAGAAATTGCTTGAGCTGCATCTTGCTTCTGGTTTCAAAAAGTACATTTTGTGGTTTAAAGGAAAAGTTCATAAAAATCATGCTTCTCTTATTCAAGAAGGCGAGGATCTGGTTACTTATGCACTCATAAATGCCACCGCAATCCGAAAAATCCTAAAGAAATATGATAAGATTCATTATTCGAAGCAAGGACAATTGTTTAAGTCACAGGTTCAGACTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTTGTGAGCTTATGGCATTCCACATCAATTTAAGAGAAACCAAGGTCAATTCGAGGAAGGAAACGGCTTTATTTGATGAATGTCGTCTCACATTTAAGGAAGGAAAACCATCACTTACTTGTGACCTATTTGATTCTATCAAAGTTGATGTTGATTTGACTTGTTCTATATGCTTGGACACGGTGTTTGATCCAGTTTCTCTGACTTGCGGTCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCTGTATCTATTGTTGATGGACTTAAGGCAGCAAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGCGTGCAGTTTATGAAGGTTCCGTGCACTTGGAAGAACTAAATATCCTCTTAGGCCGAAGCTGTCAAGAATACTGGGAACAACGACTTCAATCAGAGAGGGTAGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGAGCGTTCATGGGTGTCTAA 963 0.3946 MKFCKKYQEYMQGQKQKKLPEVGFKKLKKILKKCRRDSSQSHKPSQTCPNQCTVCDGTFFPSLLSEMSEIVGCFNERAQKLLELHLASGFKKYILWFKGKVHKNHASLIQEGEDLVTYALINATAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLCELMAFHINLRETKVNSRKETALFDECRLTFKEGKPSLTCDLFDSIKVDVDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKEKCPLCRERAVYEGSVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKEHWDSQCRAFMGV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04732 320 SMART ring_2 216 264 IPR001841 -
Trre13g04732 320 ProSiteProfiles SPX domain profile. 1 147 IPR004331 -
Trre13g04732 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 318 IPR013083 -
Trre13g04732 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 IPR033326 -
Trre13g04732 320 CDD SPX_BAH1-like 2 143 - -
Trre13g04732 320 Pfam Zinc finger, C3HC4 type (RING finger) 213 266 - -
Trre13g04732 320 CDD RING-HC_BAH1-like 206 279 - -
Trre13g04732 320 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Trre13g04732 320 ProSiteProfiles Zinc finger RING-type profile. 216 265 IPR001841 -
Trre13g04732 320 SUPERFAMILY RING/U-box 209 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04732 Trre-Chr13 54200446 54202944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04732 206 265 C3H Transcription Factor Family AT4G28270 40.299 7.96e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04732 K16275 - gmx:100787904 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04732 13 54200446 54202944 Trre13g04732 13 54200446 54202944 ECH
Trre1g04574 1 51817865 51820492 Trre13g04732 13 54200446 54202944 PCT