Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04704 ATGAAGAGAAAAACCCCTGGAACTACAAAGGGAAGGAAGAAGGTTCCACTTGGTGCGAGCAACACGAGACAGTTACAGCTTCAGCTCAGCAAATTCTCTCTCACACAATACAAACCATTACCAACAACTTGCACTTCTTCCACCATTTCTCGCTTCCAGAATCTTCTAGATTCAGAGGCCATTGAAAACCCTTCCTCTTTTGTTAGGGTTACGAATGATGCTACTGAAGCAGATAACAGAGATTGCATTCTCAGTCAAGATTTCTTCTGTACGCCAGATTATATAACACCGGATAATCAGAGAATTTTGAATGGTTTGGATTTCAATAAGGATAGTAGCCCTTGCCCTAAATCGCCGGAGAAATTGAATACTACGAAAAGCAAGAGATGTCGATTGGACGGTGTATCGGTAAATGCTCTTAGCCCTACGTATTCTAGTGACCATCAACAAGTTGTGGAACTTGGTAAGGACTCTGTTGCTGAGGAAGAAAATGTTGATAAAACGATAGCTTCTGGTAAGCCGAAGGCCCAGAATTATGTGTCACAATCTGCAGCTGCATTACGTTGCCGGGCTATGCCTCCTCCTTGCATCAGTAACCCCTATTTAAAAGACGTTTCACAAAAGGAAACAGATCCCTTTGCAAACCAAAGATCCAAATGTGCAGGTCTCTTCCCTAAATTTACAGCCGTTGACGGGCTCTCACGTTATTGCACAGACTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTTAGTTGTGTTTTCAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACAAGACAATTACAACTGGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTCCAAGCTTTGGCAGCCTTGGGTTCCCACGAGAACATTGTGGGTTATTACACTTCATGGCTTGAAAATGAACAGCTGTACATTCAAATGGAGATATGTGATCATAGCTTATCCGTAAAGAAAGGCTCTGAGTTTTTAGCTGAAGGTCAAGTGTTAGAAGCTTTATATCAGGTTGCCAATGCACTGCGATTTATGCACGGGAAAGGAATAGCTCATCTTGATGTTAAGCCTGATAATATTTATTTCAAAAATGGTGTGTATAAGCTTGGTGATTTTGGATGTGCAACTCTTATTGATAGTAGCTTGCCAATTGAGGAAGGAGATGCTCGATATATGCCCCAGGAAATCCTTAATGAGAATTTCGATCATCTTGATAAGGTCGATATTTTCTCCTTGGGAGTTTCTATTTATGAACTCGTTCGAAAATTGCCTTTGCCAGAATCAGGAGGTCATTGTTTGAATCTTAAAGAGGGAAAGTTACCACTCCTACCCGGTCATTCATTGCAATTCCAAAATTTGCTCAAGGCCATGATCGACCCTGATCCAGTCAAGAGGCCTTCTGCCAGAGAGTTGGTAGAGAACCCAATTTTCGAGAGGGTCTTAAGAACAGCGAAAAATTGA 1482 0.4157 MKRKTPGTTKGRKKVPLGASNTRQLQLQLSKFSLTQYKPLPTTCTSSTISRFQNLLDSEAIENPSSFVRVTNDATEADNRDCILSQDFFCTPDYITPDNQRILNGLDFNKDSSPCPKSPEKLNTTKSKRCRLDGVSVNALSPTYSSDHQQVVELGKDSVAEEENVDKTIASGKPKAQNYVSQSAAALRCRAMPPPCISNPYLKDVSQKETDPFANQRSKCAGLFPKFTAVDGLSRYCTDFHEIEQIGRGNFSCVFKVLKRIDGCLYAVKRSTRQLQLETERRKALMEVQALAALGSHENIVGYYTSWLENEQLYIQMEICDHSLSVKKGSEFLAEGQVLEALYQVANALRFMHGKGIAHLDVKPDNIYFKNGVYKLGDFGCATLIDSSLPIEEGDARYMPQEILNENFDHLDKVDIFSLGVSIYELVRKLPLPESGGHCLNLKEGKLPLLPGHSLQFQNLLKAMIDPDPVKRPSARELVENPIFERVLRTAKN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04704 493 Gene3D Phosphorylase Kinase; domain 1 229 319 - -
Trre13g04704 493 FunFam WEE protein kinase 230 318 - -
Trre13g04704 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Trre13g04704 493 FunFam Wee1-like protein kinase 319 488 - -
Trre13g04704 493 SUPERFAMILY Protein kinase-like (PK-like) 230 486 IPR011009 -
Trre13g04704 493 ProSiteProfiles Protein kinase domain profile. 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04704 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 53 485 - -
Trre13g04704 493 Pfam Protein kinase domain 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04704 493 ProSitePatterns Protein kinases ATP-binding region signature. 246 269 IPR017441 GO:0005524
Trre13g04704 493 Gene3D Transferase(Phosphotransferase) domain 1 320 489 - -
Trre13g04704 493 SMART serkin_6 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04704 Trre-Chr13 54089081 54092539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04704 2 487 Core Cell Cycle Gene Families AT1G02970 60.081 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Trre13g04704 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04704 K06632 - gmx:547742 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04704 13 54089081 54092539 Trre13g04704 13 54089081 54092539 ECH