Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04700 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTTTCCTCAGGAAACAATGGAGAAGATGTTTATGATGAAAGCAAGCAGCAACAAGTGCAAAATAATCTCAATGACACAGATTCAGGACCTTCTGGTGCTTCTAATAGCAATAGCTCAAGTAATCAACAACAAATCAAGAAGAAAAGAAACCTTCCTGGAACACCAGATCCCAGTGCTGAAGTTGTTGCATTATCACCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAGTTACATCGAAGAGGTCACAATCTTCCGTGGAAACTTAGGCAAAGAACGAGCGCAGAGGTGAAGAAAAAGGTGTATGTGTGTCCTGAGCCATCATGTGTCCATCATAACCCAGCTCGTGCGTTAGGCGACCTTACTGGTATCAAGAAACATTTTAGTCGCAAACATGGCGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAGGCACACCAGAAAACTTGCGGTACAAGGGAATACAAATGCGATTGTGGAACCATATTTTCTAGGAGAGATAGTTTTATAACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAAGGATTAACTAGTGGCATGCCACCAAACTTACAAAATCAAATGCATGAACCTATCTCTACTATGCCTCTAAAACAAAATTCCAACACTCCATCAGAATTAAACAATGAATATGACCCTAAAAACTCACTAAAATCACCAACACAAGAACATGTTCCAACACCATTTAGATCAACAAATGCATGTGGTGGCATGTTTTCTACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAAACTTACCTCCCTCTTCTTCATCCCTTCAACTCAGTTCCAATAGCTTCAATTACTTCAACGACAACAAAACCGGAGGACTAATTTGTGGCTCGGCTCAAATGTCGGCAACCGCTTTATTACAAAAAGCGGCACAAATAGGTTCAACTTCAAGCAATAGTGGTAATAATTCATCTATGATGCAAAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGTTTCTAATCCCATCATGATGCATCATAACCAAAATCAACAATCTTATGAACACTTTAATCCACTAAACCATAATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGTATTCACAAATCAACTATTTCAAAACAATACTAATAATGTAGCTACAATGAATAATGATATTGGAATGTTTAGTCAAATATCAATGGGAAATGATCATAGTAGTGGATTGATGAAGAATATGGCAGAGAGTAACCAATTAGTTCATGATTTCTTGGGAATTGGTGGTTCAAATTCAAGTTTGCATGAACCACAACAACAAAGATTGGAAGCATTAACTCATCAGAGGTTGGAAATTATGAATGATTTTCATCATCATCAACATCATCATCATCTTCCACATGATGATTCTGTTATGGAGAAATCAATTTGGGATGTTTGA 1545 0.3735 MSNISGDEGSFSSGNNGEDVYDESKQQQVQNNLNDTDSGPSGASNSNSSSNQQQIKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQMHEPISTMPLKQNSNTPSELNNEYDPKNSLKSPTQEHVPTPFRSTNACGGMFSTSAGALFGGPKNLPPSSSSLQLSSNSFNYFNDNKTGGLICGSAQMSATALLQKAAQIGSTSSNSGNNSSMMQKSFVSSMISPNHVSNPIMMHHNQNQQSYEHFNPLNHNDLSNMAGVSGGGVFTNQLFQNNTNNVATMNNDIGMFSQISMGNDHSSGLMKNMAESNQLVHDFLGIGGSNSSLHEPQQQRLEALTHQRLEIMNDFHHHQHHHHLPHDDSVMEKSIWDV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04700 514 MobiDBLite consensus disorder prediction 1 69 - -
Trre13g04700 514 MobiDBLite consensus disorder prediction 241 280 - -
Trre13g04700 514 Gene3D Classic Zinc Finger 63 131 - -
Trre13g04700 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Trre13g04700 514 SMART c2h2final6 85 107 IPR013087 -
Trre13g04700 514 SMART c2h2final6 161 181 IPR013087 -
Trre13g04700 514 SMART c2h2final6 126 156 IPR013087 -
Trre13g04700 514 MobiDBLite consensus disorder prediction 1 59 - -
Trre13g04700 514 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Trre13g04700 514 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Trre13g04700 514 FunFam protein indeterminate-domain 12-like 64 132 - -
Trre13g04700 514 Gene3D Classic Zinc Finger 139 219 - -
Trre13g04700 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 475 IPR031140 -
Trre13g04700 514 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04700 Trre-Chr13 54049949 54052209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04700 56 349 IDZ Gene Family AT3G50700 57.460 3.02e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g04700 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04700 - - gmx:100782774 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04700 13 54049949 54052209 Trre13g04700 13 54049949 54052209 ECH