Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04680 ATGGGTGGTTCTCCTAGAAACCCTCGACCATGTGATTACTGTGGTCATTCAACAGCAGTTCTATACTGCAGAGCAGATTCAGCAAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAGCTTTTCTCCAAACACACACGTTCCTTAATCTGTGATTCATGCGATGATTCTCCTGCTACTATACTCTGTTCAACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAAACACAATCTTTCACTCTCTTCTCCACATGAACGAAGACCTCTTGAGGGTTTTACAGGGTGTCCTTCTGTAACTGAGCTTTTATCGATTTTGGGGTTGCAGGATATTGGGAAAAAATCGTTGCTTTTACCTCAGGAAAGTGTTGGAGATGGTTATGTTGGGTATGAAATTGAAGGACTTTCTGATTTGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGATGATCTTATTTCTACTTCTCCTTCTTCTCATAATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGTAAACACAGAGAAGAGATTTTAAATCAGCTTCGTGGGATGACGAAGTCTGAGCCCTATGATCCTGAAGAGTATATACCACCGGCAAATTTATCTACAGATTTTGAACGCGACGTAAAGGCTGATATTGTTCCTTCAGTTGAGTGGCTCAGAGAAAGTAGTGAGCCTATGTATCAAGTTGTTCCTGATACATCATTCATAGCTCATACCGAAGATATTCCAGTTAATCATTCCGTATCTGCTGTTGGGGAGCCTCATACTCATGGTAACAACGAAGGGACTCCTTCAGAATCTCTTAAGTCGGAAATCTTATCAACTACTCCTAAAGCTGTTCCACCTCCATATGAAATAGCGAGTCAAGAACGGGATTCTGCATTGTTACGGTACAAACAAAAGAAGAAAACAAGAAGATACGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGACCAGGACACGAATTAAGGGCCGATTTGCAAAGATAGAGCACTGA 1050 0.4171 MGGSPRNPRPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWEKHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGYVGYEIEGLSDLFVWDAPSFVSLDDLISTSPSSHNYRAMEVPPLPKNRKAACGKHREEILNQLRGMTKSEPYDPEEYIPPANLSTDFERDVKADIVPSVEWLRESSEPMYQVVPDTSFIAHTEDIPVNHSVSAVGEPHTHGNNEGTPSESLKSEILSTTPKAVPPPYEIASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRIKGRFAKIEH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04680 349 CDD Bbox1_BBX-like 53 95 - -
Trre13g04680 349 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Trre13g04680 349 SMART bboxneu5 6 53 IPR000315 GO:0008270
Trre13g04680 349 SMART bboxneu5 54 95 IPR000315 GO:0008270
Trre13g04680 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 10 346 - -
Trre13g04680 349 MobiDBLite consensus disorder prediction 264 284 - -
Trre13g04680 349 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Trre13g04680 349 Pfam B-box zinc finger 7 51 IPR000315 GO:0008270
Trre13g04680 349 ProSiteProfiles Zinc finger B-box type profile. 6 53 IPR000315 GO:0008270
Trre13g04680 349 ProSiteProfiles Zinc finger B-box type profile. 49 95 IPR000315 GO:0008270
Trre13g04680 349 MobiDBLite consensus disorder prediction 266 284 - -
Trre13g04680 349 CDD Bbox1_BBX-like 10 53 - -
Trre13g04680 349 Pfam CCT motif 305 346 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04680 Trre-Chr13 53892418 53894795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04680 9 320 C2C2-CO-like Transcription Factor Family AT2G47890 41.693 2.00e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre13g04680 zf-B_box 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04680 - - cam:101499146 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04680 13 53892418 53894795 Trre13g04680 13 53892418 53894795 ECH