Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04660 ATGGCGGAAACGAAGGAAGAGAGCAAATCTAACGAAGAAAGTGTGAAATTGTTCGTAGGTCAAGTACCTAAACATATGACAGAAGATGAATTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCTACTCGCGCTTCTCGAGGTTGTTGTTTCGTGATTTGTCCTTCTAGAGATGAAGCTGATAAGGCCGTTAATGCTTGTCACAATAAGAAAACGTTACCAGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAGACAAGTAAAGTAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCGTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTGGGACATGCTGATTCTCAGCATCCTTCATTGTTTGGAGCTATGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGCTCATGCCGTACCGCATGCCGCCAATGCAGAATCAACCCGGTTACCACAATATGATGCCCCACATGAATCAAGGAAATGCATTGCGGCCTGATCTTGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGCTATGTTGGATCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCTGGTTCTGTTTCGCCTTCAGGTGGAAATGGCAACTCCGCTACATCATCAGGATCCAGCAGAAATTCTGGCGGTGGTCAGATTGAAGGACCACCTGGCGCCAATCTATTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCAAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGAGTCAGCAAATGTTTTGGCTTTGTAAGCTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAATATGATGAATGGATACCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCGGGTAAACCTTACTGA 1302 0.424 MAETKEESKSNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPMNSPPGSVSPSGGNGNSATSSGSSRNSGGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAINMMNGYQLGGKKLKVQHKRDNKPGKPY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04660 433 MobiDBLite consensus disorder prediction 194 208 - -
Trre13g04660 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Trre13g04660 433 FunFam RNA-binding protein BRN1 isoform X1 100 193 - -
Trre13g04660 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 426 IPR000504 GO:0003723
Trre13g04660 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Trre13g04660 433 MobiDBLite consensus disorder prediction 316 340 - -
Trre13g04660 433 SUPERFAMILY RNA-binding domain, RBD 103 428 IPR035979 GO:0003676
Trre13g04660 433 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Trre13g04660 433 CDD RRM3_CELF1-6 350 422 - -
Trre13g04660 433 Gene3D - 319 425 IPR012677 -
Trre13g04660 433 CDD RRM1_2_CELF1-6_like 16 92 - -
Trre13g04660 433 FunFam RNA-binding protein BRN1 2 99 - -
Trre13g04660 433 Gene3D - 2 98 IPR012677 -
Trre13g04660 433 Gene3D - 99 194 IPR012677 -
Trre13g04660 433 FunFam RNA-binding protein BRN1 314 425 - -
Trre13g04660 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Trre13g04660 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 420 IPR000504 GO:0003723
Trre13g04660 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Trre13g04660 433 SMART rrm1_1 104 180 IPR000504 GO:0003723
Trre13g04660 433 SMART rrm1_1 16 92 IPR000504 GO:0003723
Trre13g04660 433 SMART rrm1_1 349 422 IPR000504 GO:0003723
Trre13g04660 433 MobiDBLite consensus disorder prediction 303 345 - -
Trre13g04660 433 PANTHER RNA BINDING PROTEIN 14 425 - -
Trre13g04660 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Trre13g04660 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Trre13g04660 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Trre13g04660 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Trre13g04660 433 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04660 Trre-Chr13 53791647 53796621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04660 333 431 Eukaryotic Initiation Factors Gene Family AT4G34110 35.577 1.68e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04660 K13207 - gmx:100813239 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04660 13 53791647 53796621 Trre13g04660 13 53791647 53796621 ECH