Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04643 ATGGGTGCCAATTCGCTTGCCGATCCCACTCACGATCTCAACGAACAGATCTCTCAGCTCATGCAGTGCAAGCCTCTATCTGAACAACAGGTTAAAGAATTATGTGAGAAGGCTAAAGAGATTTTAATGCATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCACGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACCAACTACTTGTTTATGGGTGATTATGTGGACCGTGGTTATTATTCAGTTGAGACTGTAACACTTCTCGTGGCACTGAAAGTGCGGTATCCTCAACGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAAATATGGGAGTGCTAATGTCTGGAAGATCTTTACAGACCTCTTTGATTTTTTTCCATTGACCGCATTGGTTGAATCAGAAATATTTTGTTTGCATGGTGGACTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCTATGTGTGATCTACTGTGGTCTGACCCAGATGACAGATGTGGTTGGGGTATTTCTCCTCGTGGTGCTGGATATACCTTTGGCCAGGATATATCTGAACAATTCAATCACACGAACAGCCTTAAATTGATTGCTAGAGCTCACCAGCTTGTTATGGACGGATTTAACTGGGCTCATGAACAAAAAGTGGTTACCATTTTCAGTGCTCCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCAAGGAGAGGAGAGCCTGATGTCACTCGAAGAACACCTGATTACTTCCTGTAA 939 0.426 MGANSLADPTHDLNEQISQLMQCKPLSEQQVKELCEKAKEILMHESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04643 312 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Trre13g04643 312 Gene3D - 7 312 IPR029052 -
Trre13g04643 312 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 11 312 IPR047129 GO:0004722
Trre13g04643 312 SUPERFAMILY Metallo-dependent phosphatases 11 297 IPR029052 -
Trre13g04643 312 CDD MPP_PP2A_PP4_PP6 12 296 - -
Trre13g04643 312 SMART pp2a_7 26 296 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Trre13g04643 312 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Trre13g04643 312 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Trre13g04643 312 FunFam Serine/threonine-protein phosphatase 6 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04643 Trre-Chr13 53664553 53669833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04643 33 242 Calmodulin-binding Proteins AT5G63870 34.524 1.79e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04643 K04382 - thj:104821037 632.098