Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04637 ATGTCGAAATTTTTCTCACAGGGTGGTGGTACTTCTGATGATGATGACAGTGATTTTGATGAATCGGTTGATGATGTACCGGTTGAACCTGACACTGATCCTACTTTAAGTAAGTACAGGGTGGATAATGCTAGTGACAGCGATGACGATGATGGCCACAGGCGTGTTGTTAGGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTCAACGGTTGATCAGATGAAGAATGCAATGAAAATTAATGATTGGGTTAGTTTGCAAGAGAGTTTTGACAAAATCAACAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAATCTTTATATTAAGGCTCTTGTCTTGTTAGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAAGAGCTGATTACTAAATGCAGGGAGAGTCCTGAGAGTGAGGAGGAAAAGGATGAGGATGAGGAGAGTGATGAAGAAGATGATAGTGATGGTGAGACTATTGAGCCCGAGCAGCTTCAAAATCGGGAACCGAAATCGGATTCAGAAGCCGAATACGAAGAGGGAAGGGATGATGCTGGTGATGGACCGTGGGACCAAAAGCTTAGCAGGAAAGATAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTTGCAGCTAGGGGAAGGAGGGGTACCGGGAGGTTTGAACAGGTTGAACAACTTACCTTTTTAACAAAAGTGGCTAAAACACCAGCACAGAAACTTGAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGACGTTAATCCAGGTCTTAGTGGCCATATGCCCATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCGGTGGAGCCAGATGAGAATGAAACTCAAAAAGGCGCTGACTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACCGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTACGTCCAGAGACTCAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGCAGCGGAGATTTCAAATCATCTTCCAAGGTGGCTTTGAGGAGGGTTGAACTCATATACTACAAACCACAAGAGGTTTATGATGCCATGAGGAAATTGGCTGAGCTGACAGAAGATGGAGATAATGAAGGCGAGGCTAGCGAGGAGTCCAAAGGGTTTGGGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTCACGGAGAATAGCAGGGCCCTAATGGATGTATTAGTTTCACATATATACAAATATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTAGAAGCAGTGCATCTTATAACTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGCTCATGATGCAAAGCACAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACGTTGACTGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCACTAGGGTTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATCAGCTCTCTTGATGTATGGAAATTTGTTAAAAATCGAGACACCGTATTGGGAATGCTGAAGGACAAAATCAAGGAAGAGGCGCTTAGGACGTATCTCCTTACCTTCTCTTCATCCTATGAGTCTCTGAGTCTGGATCAAGTCACGAAATTTTTCGACCTATCTGTTCCCCGTACTCATAGCATCGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTGCTGGTGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGCCACGGCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCTGGTAGGAGTGGCTATTCAAGGGATCGAGTGGGGCGTGCTGGTTATCAGAGTTCAGGTAGGAGTAATCAAGGGGGTTCAGGACTGAGGGGACCCCAGGGAGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2796 0.4438 MSKFFSQGGGTSDDDDSDFDESVDDVPVEPDTDPTLSKYRVDNASDSDDDDGHRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPNLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKDEDEESDEEDDSDGETIEPEQLQNREPKSDSEAEYEEGRDDAGDGPWDQKLSRKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLESSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNEGEASEESKGFGDTRIPTAFVVTPELVSRKPTFTENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLITAMLLEVPNMAANAHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRVLIKGDFNKAFEVISSLDVWKFVKNRDTVLGMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAAAAGGGGGTGPSGGRWQDLSYSQPRQGSGRAGYGNAGGRPLAYGQAGRSGYSRDRVGRAGYQSSGRSNQGGSGLRGPQGDVSTRMVSLKGVRA 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04637 931 MobiDBLite consensus disorder prediction 134 153 - -
Trre13g04637 931 MobiDBLite consensus disorder prediction 154 173 - -
Trre13g04637 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre13g04637 931 MobiDBLite consensus disorder prediction 195 229 - -
Trre13g04637 931 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Trre13g04637 931 MobiDBLite consensus disorder prediction 853 867 - -
Trre13g04637 931 MobiDBLite consensus disorder prediction 132 229 - -
Trre13g04637 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 39 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre13g04637 931 Pfam PCI domain 659 787 IPR000717 -
Trre13g04637 931 Coils Coil 143 170 - -
Trre13g04637 931 MobiDBLite consensus disorder prediction 899 914 - -
Trre13g04637 931 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Trre13g04637 931 MobiDBLite consensus disorder prediction 819 931 - -
Trre13g04637 931 MobiDBLite consensus disorder prediction 174 194 - -
Trre13g04637 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 926 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre13g04637 931 MobiDBLite consensus disorder prediction 13 28 - -
Trre13g04637 931 MobiDBLite consensus disorder prediction 1 62 - -
Trre13g04637 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 IPR000717 -
Trre13g04637 931 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04637 Trre-Chr13 53631698 53635959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04637 2 931 Eukaryotic Initiation Factors Gene Family AT3G56150 67.619 0.0 1168