Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04634 ATGGCTGATACCGTCCCTGCTGTCGTTGCTACCGAAGTTGATCCAAATGTCATCGAGGTCAAGCTGTTCAACAAATGGAGCTTCGACGATGTTCATGTCAGTGATCAGTCTCTTGAGGACTACATCGGAGTGTTGCCAGCGAAACATGCAACTTATGTTCCTCACACTGCCGGTAGGTACTCGAAGAAGCGTTTCAGGAAAGCTCAGTGTCCCATTATTGAGAGGCTGACAAACTCTCTCATGATGCACGGTAGAAACAATGGAAAGAAACTCAAGGCTGTTAAGATTATTAGGCATGCTATGGAGATCATTCACTTGCTAACTGACCAGAACCCAGTTCAAGTTATTGTTGATGCTGTTGTCAACAGTGGTCCCAGAGAAGATGCTACTAGAATTGGATCTGCTGGAGTTGTTAGGAGGCAAGCTGTGGATATCTCACCCCTTCGCAGGGTTAACCAGGCCATCTATCTTCTAACAACAGGTGCCCGAGAAGCTGCGTTCAGAAACATTAAGACTGTTGCTGAATGCTTGGCTGATGAACTTATTAATGCTGCTAAAGGTTCATCCAACAGCTATGCAATCAAGAAAAAGGATGAGATAGAGAGAGTTGCCAAGGCTAATCGTTAA 627 0.4514 MADTVPAVVATEVDPNVIEVKLFNKWSFDDVHVSDQSLEDYIGVLPAKHATYVPHTAGRYSKKRFRKAQCPIIERLTNSLMMHGRNNGKKLKAVKIIRHAMEIIHLLTDQNPVQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04634 208 ProSitePatterns Ribosomal protein S7 signature. 74 100 IPR020606 GO:0003723|GO:0003735|GO:0006412
Trre13g04634 208 PANTHER RIBOSOMAL PROTEIN S7 10 208 IPR000235 GO:0006412
Trre13g04634 208 FunFam 40S ribosomal protein S5 4 208 - -
Trre13g04634 208 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 208 IPR000235 GO:0006412
Trre13g04634 208 CDD uS7_Eukaryote 21 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre13g04634 208 NCBIfam 30S ribosomal protein S7 19 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre13g04634 208 Pfam Ribosomal protein S7p/S5e 66 208 IPR023798 -
Trre13g04634 208 SUPERFAMILY Ribosomal protein S7 21 208 IPR036823 -
Trre13g04634 208 Gene3D Ribosomal protein S7 domain 3 208 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04634 Trre-Chr13 53605666 53607852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04634 19 208 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.947 1.84e-129 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04634 K02989 - gmx:100815850 357.451