Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04632 ATGGCTGCCACCAATGCAGGCACAGCGCCGCCGCGTACACTCTCTGAGAAAGAAGCCGGTATCCAAATGATGTTGGCTGCCGATGTCCATCTCGGTACCAAAAACTGCGATTTCCAAATGGAACGCTACATCTTTAAACGCCGTAATGACGGTATTTATATTATCAATCTTGGAAAGACATGGGATAAGCTTGTTCTTGCTGCTAGGGTTATTGTTGCAATTGAAAACCCTCAGGATATCATTGTTCAATCCGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCAGCTTCAAACTTCATTCAATGAGCCTCGTCTTCTTATCCTTACCGATCCAAGAACCGATCACCAGCCAATTAAGGAAGCTGCTCTTGGAAATATTCCGACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGTATCCCTGCCAACAACAAAGGAAAGCACAGCATAGGTTGTCTGTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGCACTATTCGCCCTGGCCATAAGTGGGATGTCATGGTGGATCTGTTCTTCTACAGAGAACCCGAGGAGGCCAAGGAGCAAGAGGAGGATGAAGTTGCTGTTCCAGATTACGCCATTGCTGACTTCAATGCAGCTTCTATCCCCAATGATGGACAGTGGCCTGCTGCAATCGATCAGCCATGGGCTGATTCCGTTCCACAACCTATTGCAGCAGCTCCTAGTAACTGGACAGCCCCAGAAGCTGGGGACTGGGGTGAAGCTGTTCCACCTCCTCAACAAATACCTATACCTGTTCCTGGAGTTGAATCTATCCAAGCAACTGGATGGGAATAA 909 0.4708 MAATNAGTAPPRTLSEKEAGIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWDKLVLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKEQEEDEVAVPDYAIADFNAASIPNDGQWPAAIDQPWADSVPQPIAAAPSNWTAPEAGDWGEAVPPPQQIPIPVPGVESIQATGWE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04632 302 Hamap 40S ribosomal protein SA [rps-0]. 8 279 IPR027498 GO:0003735|GO:0006412|GO:0015935
Trre13g04632 302 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
Trre13g04632 302 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 Gene3D - 20 225 - -
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 PANTHER 40S RIBOSOMAL PROTEIN SA 11 301 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre13g04632 302 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre13g04632 302 FunFam 40S ribosomal protein SA 20 226 - -
Trre13g04632 302 MobiDBLite consensus disorder prediction 258 302 - -
Trre13g04632 302 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre13g04632 302 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04632 Trre-Chr13 53592278 53593703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04632 1 281 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.592 1.07e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04632 K02998 - gmx:100805318 518.464