Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04595 ATGCCGAGTTTCAGAATGATCAACTTGTTATCCCGTATCAAAACAAGAAGAAAAAAGAACAACAAATTCATCAGAAACAGAAACAAAAACGTTCTCAAACACAAAAACCGCATTTCTTCCATTACCAAAAATTTCCCATCTCCCATTGAAGAAGAAGAAGAAGATACAGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACTCATGGAGTTCAACCCTTAGGAAATCTCTATTTCAACCCAGGTTCCATCAACTCCAGAGACACTGGTTTAGGTAATCTTCATACTCTCACCGATGAACTTGTTCTTGATATTCTGGGTTTTTTGGATGCTACTAGTTTAGGTGTTTTAGCTTCTGTGAGCAAATCGTTTTATGTTTTTACCAATCATGAACCCATTTGGAGGAATCTTGTGTTGGAGAATCTTATTGATGGGTTTCAGTATAATGGGTCATGGAAATCTACTTTTGTTTCTGCTTATTACCCTTCATTTGATATTTCGAGTAACGATCGTAGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATATTATTAGGAAGAGAGGTATTTCGGTTGAAGAATTTGTAGCGAGTTTTGAAGAGGTTAATAAGCCGGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGGAATTGGGATAGAGATTATTTGGTGAAGTTATGTGGTGATGATGTTAAGTTTTCGGTTGGGCCTGTGGAGATGAAGTTAAGGGACTATTTTCGATATTCAGATCAAGTTAGAGAAGAAAGGCCGTTGTATTTGTTTGATCCGAAGTTTGCTGAAAAAGTTCCGAAATTGGGTTTGGAATATGAAGTTCCGGTGTATTTTCGGGAGGACTTGTTTGATGTTTTGGGCAATGAGAGACCTGATTATAGATGGATTATTATGGGACCAGCTGGATCTGGATCGTCTTTTCACGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAAGGGTCGAAGAAATGGATATTGTTTCCTCCTGAGGTTATTCCGCCCGGTGTTCATCCTAGTCCTGACGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGCGCAACTAAGAATTGGCAAAAGAGACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCAATTGCCATAACACAAAACTATGTTAGCAGGAGAAATTTGTTAAATGTGTTGGATTTTCTTAAAAGGCCAAACGCGAGCACACTGGTATCTGGAACAAAGGATAGAGTAAATTTGCATGATAAGTTTAAGAATGCTATTGAAGCTTCTTTTCCCGGAGCAATTGATGAACTGACCCAAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTCACAGACTCCAATGTAGGAGCTTTCAGGTTCTCTTTCTAG 1557 0.3879 MPSFRMINLLSRIKTRRKKNNKFIRNRNKNVLKHKNRISSITKNFPSPIEEEEEDTEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDATSLGVLASVSKSFYVFTNHEPIWRNLVLENLIDGFQYNGSWKSTFVSAYYPSFDISSNDRRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIIRKRGISVEEFVASFEEVNKPVLLEGCIDNWDALRNWDRDYLVKLCGDDVKFSVGPVEMKLRDYFRYSDQVREERPLYLFDPKFAEKVPKLGLEYEVPVYFREDLFDVLGNERPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPEVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWQKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASTLVSGTKDRVNLHDKFKNAIEASFPGAIDELTQKEEEKKIQQRKLSFWDSVTDSNVGAFRFSF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04595 518 Gene3D Cupin 140 438 - -
Trre13g04595 518 Gene3D - 88 137 - -
Trre13g04595 518 ProSiteProfiles F-box domain profile. 93 139 IPR001810 GO:0005515
Trre13g04595 518 MobiDBLite consensus disorder prediction 47 71 - -
Trre13g04595 518 Pfam Cupin-like domain 217 436 IPR041667 -
Trre13g04595 518 ProSiteProfiles JmjC domain profile. 293 453 IPR003347 -
Trre13g04595 518 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 93 516 - -
Trre13g04595 518 SMART fbox_2 99 139 IPR001810 GO:0005515
Trre13g04595 518 SUPERFAMILY Clavaminate synthase-like 206 451 - -
Trre13g04595 518 SMART cupin_9 284 453 IPR003347 -
Trre13g04595 518 FunFam F-box protein At1g78280 187 438 - -
Trre13g04595 518 Pfam F-box domain 99 137 IPR001810 GO:0005515
Trre13g04595 518 SUPERFAMILY F-box domain 91 161 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04595 Trre-Chr13 53368726 53371211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04595 84 442 Glycosyltransferase AT1G78280 38.108 1.68e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g04595 Cupin_8 2.9e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04595 - - lja:Lj1g3v4753250.1 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04595 13 53368726 53371211 Trre13g04595 13 53368726 53371211 ECH