Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04592 ATGGAGGATGGAAATTATACAAGTGGATTATGGAGAACGAAATCGGAACAATTAGAGTCAGTGGTAGAAGATTTGAAGTTGCCACCAGGATCAAGTGAATCAACCGGCGGTGGTAGTGGGAGTCTTACAAGGAAGTCGAGCAAGAGGGCGTCGCCTGGTGGTAGAAACACGCACATAAGAAAGGCGAGGAGCGCCCAAACATCGTTGAAGGTTGATTTGGATGAGGTAAATAGTGGTGCTGCCCTTAGTAGAGCTTCAAGTTTGGGTCTCTCATTCTCCTTTACTGGCTTCTCTGTTCCTCTTGATGAAATCTCTAACTCCAAACCATTCAGTGATGATGATATCCCTGAGGATATTGAAGCTGGAATTCATAAGCCAAAGTTTCAAACAGAACCTACTCTGCCAATATATCTAAAGTTCACAGATGTGACATACAAGGTAGTGATTAAAGGCATGACAAAAAGTAATGAAAAAGATATCTTGAAAGGGATTACTGGTTGTGTAAATCCAGGTGAAGTTTTAGCATTGATGGGTCCCTCAGGAAGTGGTAAAACATCTTTGTTAAATCTACTTGGACAAAGGTTACATCAACCAGCAATTGGTGGATCTATTACTTATAATGATCAACCATATTCCAAGTTCCTAAAAAGCAGGATTGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAAACATTAACATATGCAGCTCGTTTAAGGTTGCCGAAAACATTAACCAAAGAGGAAAAGGAAAAAAGAGCTTTAGATGTTATCTATGAGTTAGGCTTGGAGAGGTGTCAAGACACTATGATAGGAGGTTCGTTTGTTCGAGGAGTATCCGGTGGAGAGAGGAAGAGAGTTTGTATCGGCAATGAGATCATAATCAATCCTTCTATTTTGTTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACTGCCTTGAGGATAGTTCAAATGTTACATGACATAGCCGAGGCTGGTAAAACTATAGTGACAACAATCCATCAACCATCAAGTAGACTCTTCCACAAATTCGATAAGTTGATACTTTTGGGAAAAGGGAACTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGGATTATTTCAAGTTTATAGGGTGTAGTCCTCTCATTACCATGAATCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACATGCTTGATATTTCTGTACCATCAGAGTTAGAGGATAAAGTTCATATGGGAAATGCAGAAACCGAAACTTTCAATGGAAAACCATCAGCTGCATCTGTACAAGAGTATCTAGCAGAGGCATATGAAACTAAGGTAGCAGAAACCGAGAAGAAAAAGCTAATGGTTCCAATTCCTCTTGATGAAGAAGTTAAAGCTAAGGTTTGTTCGCGTAAAAGACAATGGGGAGCAAGTTGGTTAGAGCAATACTCAATATTGTTTTCTAGAGGATTCAAAGAACGTAGGCACGACTATTTTAGCTGGTTGAGAATCACACAAGTTCTTTCCACTGCAGTCATTTTGGGATTACTATGGTGGCAATCTGATGCTAATAACCCAAAGGGTCTTCAAGATCAGGCGGGATTGCTTTTCTTTATTGCGGTGTTTTGGGGATTTTTTCCGGTGTTCACAGCAATATTCACATTTCCTCAAGAGAGAGCAATGTTGAATAAGGAAAGAGCAACAGATATGTATAGATTAAGTGCATACTTTGTGGCTAGAACTACAAGTGACCTTCCATTAGATTTGGTGTTACCAGTGCTTTTCCTCCTTGTTGTTTATTTCATGGCTGGTTTGAGACTCAGTGCCGCGCCCTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTAGCAGCTCAGGGACTTGGACTTGCTATTGGTGCTACACTGATGGACTTGAAAAGGGCAACAACTTTGGCATCAGTCACTGTCATGACTTTCATGTTGGCTGGAGGTTTCTTTGTACAGAAAGTCCCCATATTCATATCATGGATACGGTACCTATCTTTCAACTACCACACATACAAATTGTTGCTGAAGGTACAATATGAACACATAACACCTAGCATAAATGGGATGAGAATTGACAGTGGTATCAATGAGGTTGTTGCTCTAATAGCCATGGTTTTTGGTTACCGTTTATTGGCATATTTTGCTCTGCGGTGGATGAATATTCAACCATAG 2199 0.3988 MEDGNYTSGLWRTKSEQLESVVEDLKLPPGSSESTGGGSGSLTRKSSKRASPGGRNTHIRKARSAQTSLKVDLDEVNSGAALSRASSLGLSFSFTGFSVPLDEISNSKPFSDDDIPEDIEAGIHKPKFQTEPTLPIYLKFTDVTYKVVIKGMTKSNEKDILKGITGCVNPGEVLALMGPSGSGKTSLLNLLGQRLHQPAIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTKEEKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASEAMDYFKFIGCSPLITMNPAEFLLDLANGNMLDISVPSELEDKVHMGNAETETFNGKPSAASVQEYLAEAYETKVAETEKKKLMVPIPLDEEVKAKVCSRKRQWGASWLEQYSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAAPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGMRIDSGINEVVALIAMVFGYRLLAYFALRWMNIQP 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04592 732 CDD ABCG_EPDR 135 366 - -
Trre13g04592 732 SMART AAA_5 170 361 IPR003593 GO:0016887
Trre13g04592 732 Gene3D - 137 378 IPR027417 -
Trre13g04592 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 377 IPR027417 -
Trre13g04592 732 Pfam ABC transporter 161 312 IPR003439 GO:0005524
Trre13g04592 732 ProSitePatterns ABC transporters family signature. 284 298 IPR017871 GO:0005524|GO:0016887
Trre13g04592 732 MobiDBLite consensus disorder prediction 32 53 - -
Trre13g04592 732 MobiDBLite consensus disorder prediction 20 66 - -
Trre13g04592 732 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 93 721 - -
Trre13g04592 732 FunFam ABC transporter G family member 22 148 378 - -
Trre13g04592 732 Pfam ABC-2 type transporter 479 688 IPR013525 GO:0016020|GO:0140359
Trre13g04592 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 138 384 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04592 Trre-Chr13 53346659 53353701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04592 160 398 Calmodulin-binding Proteins AT2G36910 28.571 1.00e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04592 K05681 - gmx:100798801 1162.13