Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04581 ATGGAAAGCAAAACTGAAAATCTTGTGACATCGGCCGCTGCCTTTGTTGAAGGTGGCATTCAAGAATCTTGTGATGATGCTTGCAGCATATGCCTCGAAGAGTTTTGCGATAATGATCCTTCAACTGTCACAGTTTGTCGACACGAGTTTCACCTACAATGTGTTCTTGATTGGTGTCAAAGAAGCTCACAATGTCCTATGTGTTGGCAACCTCTTAGCTTGACCGATCCTACCGGTCAAGAATTATTTAAGGCTGTAGAGCAAGAAAGGAATTTTTGGGTCACTCCATCAAGAAATGTCAATACCTTTCATCAATCTACTCTTCGAGATTTTGGATTGCAACATCCACGCATAGGCGTCAATGATTATGATTTGGAAGAGAGAATACTTCAACATCTAGCTGTTGTTGCATCAAATGAAAGAATACATCAACTTGGTCAAAGGGAAGGTCAACGAATTCAACCAATACAGCAGACACCACAACTTCAAACTGAAAGTTCTTCAACTTATGGATCTACTATTATGGAAACAAATGGCCAAGAAACTTACTCTAGGGATAGAAGTGATGCGGCTGATTCTTGCCCTATAAATCAAAATAGAGCAAAACCATCAGAATTACACTCTTTTTCAGATACTTTGCGATCTAGACTTAATGCAGTGTCGACGAGATATAAAGAGTCAATTTCAAAGAGTACAAGGTGTTGGAAGAATAAGTTGTTGTTTCCTCGAAGTTCTTCCATGGCAGAAGTTGAAACAAATGCGAGAAAAGAGATGAACCCGGGAATTTCCTAG 792 0.3965 MESKTENLVTSAAAFVEGGIQESCDDACSICLEEFCDNDPSTVTVCRHEFHLQCVLDWCQRSSQCPMCWQPLSLTDPTGQELFKAVEQERNFWVTPSRNVNTFHQSTLRDFGLQHPRIGVNDYDLEERILQHLAVVASNERIHQLGQREGQRIQPIQQTPQLQTESSSTYGSTIMETNGQETYSRDRSDAADSCPINQNRAKPSELHSFSDTLRSRLNAVSTRYKESISKSTRCWKNKLLFPRSSSMAEVETNARKEMNPGIS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04581 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 76 IPR013083 -
Trre13g04581 263 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 12 77 - -
Trre13g04581 263 MobiDBLite consensus disorder prediction 148 206 - -
Trre13g04581 263 SMART ring_2 28 68 IPR001841 -
Trre13g04581 263 MobiDBLite consensus disorder prediction 150 181 - -
Trre13g04581 263 SUPERFAMILY RING/U-box 21 75 - -
Trre13g04581 263 Pfam Ring finger domain 27 68 IPR001841 -
Trre13g04581 263 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 6 78 - -
Trre13g04581 263 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Trre13g04581 263 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04581 Trre-Chr13 53302870 53304775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04581 26 76 C3H Transcription Factor Family AT4G23450 49.020 2.40e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04581 K19043 - gmx:100800419 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04581 13 53302870 53304775 Trre13g04581 13 53302870 53304775 ECH