Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04578 ATGGGAAACAACTGTGTTGGATCCAGAAAACCTTCTAAAGATGATCAAATTTTTCCATCTTTTTTTCCAACTTCTTTTTGGTGGTCATCATGGTCACACCCACCATCTATTCACAATATTGACAACAAAGAAATCAAGCAAACTAGTATATGTATATCACATGATTTAGAATCAGTTATTATGCAGTTCAAGGAACAGGTTCCTAAACCAACAACTAACACTGCTACAAAACCAAAATCAAAAGCGAAACCGATGTTTTTGCCTAATATTAAGAGGGTAGCAGCAAAAACAAAAAGTGCTGGACTTCGAGAAGAATCGGTTTTACTGACAAATTTGGGTCCTTTTAGGCAATACTATAAGTTGGGAGATGAACTTGGGAAAGGACAATATGGAATTACTTCACTTTGTTTTGAGAAAGCAACGGGGAAAAAGTATGCGTGCAAGACAATCCCGAAGGTAAAATTGGTGAGAGATGATGATATAGAGGATGTGAGGAGGGAGATTAAGATAATGCATCATTTGGTTGGGAGTCCTAATGTGATAAATATTAAAGGAGCTTATGAGGATCCTATTGTTGTTTATATTGTCATGGAATTATGTGAAGGGGGTGAGTTGTTTGATAGGATTGTCGAAAGGGGTCATTACACTGAAAGAAAAGCAGCTAAACTTGCTAGGACTATTTTTAGTGTCGTTGAAGCATGTCACTCGCTTGGTGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGACATGAAGACTCTACTCTTAAGGCAATTGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGAAAAGTTTAGTGATGTGGTAGGGAGTGGTTATTATATTGCACCCGAGGTTCTAGACAAGTGTTATGGTCAAGAAGCGGATGTTTGGAGTGCAGGTGTGATCATATACATTCTCTTATGTGGAACACCTCCCTTTTATGGTGAATCGGAACAAGAGATATTTGACGAGATTTTGCATGGTGAACTTGATTTCTCTTCGGATCCTTGGCCAAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAAAGGATAACAGCACATGAAGTTCTTTGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTAAGTCGTTTAAAACAATTTTCGGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCGGAGAATCTCTCTGAAGAAGAAATTTATGGATTAAAAGAATTGTTTAAGATGATAGACACTGACAACAGTGGTCAAATTACTTTCGAAAAACTCAAGGCTGGACTGAAAATGTTCGGTGCCAATCTCGGTGAATCCGAAATATTTGATCTATTGCAAGCTGCAGATGTTGATAATAGTGGCACAATTGACTATGGAGAATTCATAGCTGCCACATTGCATTTAAACAAAGTTGGCAAGGAAGATAATTTAGCTGCAGCTTTCTCTTATTTTGATAAAGATGGAAGTGGCTACATCACTCAAAATGAGCTTCAACAAGTTTGTAAAGAATTTGGTATGGAGGATGTCCACTTAGAGGAAATGATCAGAGAAGTTGATCAAAATAATGATGGACAAATAGACTACAATGAATTTGTAGCTATGATGCAGAGAGGCAATGCAGATTTAGGTAATAGTGGTCTAAAGTGTAGCAGTAGCTTTAACATTGGATTAAGGAAGACAGAGGCACTATCAGTATATTAA 1761 0.3748 MGNNCVGSRKPSKDDQIFPSFFPTSFWWSSWSHPPSIHNIDNKEIKQTSICISHDLESVIMQFKEQVPKPTTNTATKPKSKAKPMFLPNIKRVAAKTKSAGLREESVLLTNLGPFRQYYKLGDELGKGQYGITSLCFEKATGKKYACKTIPKVKLVRDDDIEDVRREIKIMHHLVGSPNVINIKGAYEDPIVVYIVMELCEGGELFDRIVERGHYTERKAAKLARTIFSVVEACHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGEKFSDVVGSGYYIAPEVLDKCYGQEADVWSAGVIIYILLCGTPPFYGESEQEIFDEILHGELDFSSDPWPSISESAKDLVKKMLVRDPSKRITAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEIYGLKELFKMIDTDNSGQITFEKLKAGLKMFGANLGESEIFDLLQAADVDNSGTIDYGEFIAATLHLNKVGKEDNLAAAFSYFDKDGSGYITQNELQQVCKEFGMEDVHLEEMIREVDQNNDGQIDYNEFVAMMQRGNADLGNSGLKCSSSFNIGLRKTEALSVY 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04578 586 ProSiteProfiles EF-hand calcium-binding domain profile. 425 455 IPR002048 GO:0005509
Trre13g04578 586 CDD EFh 497 556 IPR002048 GO:0005509
Trre13g04578 586 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Trre13g04578 586 Pfam EF-hand domain pair 437 487 IPR002048 GO:0005509
Trre13g04578 586 SUPERFAMILY EF-hand 416 557 IPR011992 -
Trre13g04578 586 FunFam Calcium-dependent protein kinase 1 121 204 - -
Trre13g04578 586 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04578 586 Gene3D Transferase(Phosphotransferase) domain 1 196 387 - -
Trre13g04578 586 FunFam Calcium-dependent protein kinase 1 385 559 - -
Trre13g04578 586 SUPERFAMILY Protein kinase-like (PK-like) 118 378 IPR011009 -
Trre13g04578 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Trre13g04578 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 551 - -
Trre13g04578 586 CDD STKc_CAMK 119 376 - -
Trre13g04578 586 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Trre13g04578 586 SMART efh_1 496 524 IPR002048 GO:0005509
Trre13g04578 586 SMART efh_1 424 452 IPR002048 GO:0005509
Trre13g04578 586 SMART efh_1 530 558 IPR002048 GO:0005509
Trre13g04578 586 SMART efh_1 460 488 IPR002048 GO:0005509
Trre13g04578 586 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Trre13g04578 586 Pfam EF-hand domain pair 496 556 IPR002048 GO:0005509
Trre13g04578 586 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04578 586 Gene3D - 388 560 - -
Trre13g04578 586 FunFam Calcium-dependent protein kinase SK5 205 389 - -
Trre13g04578 586 Pfam Protein kinase domain 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04578 586 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Trre13g04578 586 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Trre13g04578 586 Gene3D Phosphorylase Kinase; domain 1 110 195 - -
Trre13g04578 586 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Trre13g04578 586 ProSiteProfiles EF-hand calcium-binding domain profile. 530 561 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04578 Trre-Chr13 53277639 53280377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04578 64 578 EF-hand Containing Proteins AT3G10660 70.485 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre13g04578 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04578 K13412 - gmx:100814475 798.119