Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04568 ATGGCTATGCAAACTGTTTATCTGAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAATTATCATCTGGTGGTACTAATAATTCAGCAGGAGTACCATGGTGGAGTGGTTTTGGATCTCAATCAGTGTATGGAGAGTCTGGTGGCCAAATCAAATCATTTTCATTGGAGCCACCTTTTTCTTCTGTTGACCAACTTGCTGCAACTGCAAGTAAGCAAGCTGTTTTGGGGAAAGGGCTAACTAATCACTTTACCATCTTTCCAGATGATTTTAAAATGTCAGGTGATGCACAAAAGCCTCATACTGCTATATCACTGCAGTCATCACTCCCTGATACCCCGCCTCGTTTCGAGCTAGGATTTAATCAACCTATGATCTGTACAAAATATCCTTATGCAGATCAATTTTATGGACTCATCTCAACTTATGGACCACAGATTCCGGGGCGTGTAATGCTGCCACTTAACATGACATCTGATGATGGCCCGATTTATGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGCGCCAAAGCTGTACTTGGACAGAAATTGATTAAACGTCGCAAGCCCTACATGCATGAGTCACGCCATCTCCATGCATTGCGGCGACCAAGAGGATGTGGTGGCCGCTTCTTGAACACAAAGAAATCTGCTAGCGGAGATGGTAAAACGGGAAGCAAAGTGCATAAATTTGACGGTCAACAATTGCAGTGCAGTGGCTCTCAGAGTTCCGAACTCCTTGAATCTGATGTTGGAACTTTAAACTCCTCAAAAGAAACTAATGGAAGCAGTCCGAATATTTCTGGGTCCGAGGTGACTAGTTTGTATTCAAGAGGAAATTCCACCATCAATCATCTTGGATATAATGTCCACTCATTGGCAGACATGATCGATGGTGGGCATGGCGTTATCATGCCCACCAAATGGGTTACAGCTGGCAACTGCTGTAACCTTAAAGCTTGA 984 0.439 MAMQTVYLKEHEGIAHNFVGQLSSGGTNNSAGVPWWSGFGSQSVYGESGGQIKSFSLEPPFSSVDQLAATASKQAVLGKGLTNHFTIFPDDFKMSGDAQKPHTAISLQSSLPDTPPRFELGFNQPMICTKYPYADQFYGLISTYGPQIPGRVMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHALRRPRGCGGRFLNTKKSASGDGKTGSKVHKFDGQQLQCSGSQSSELLESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNSTINHLGYNVHSLADMIDGGHGVIMPTKWVTAGNCCNLKA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04568 327 MobiDBLite consensus disorder prediction 210 279 - -
Trre13g04568 327 MobiDBLite consensus disorder prediction 237 279 - -
Trre13g04568 327 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Trre13g04568 327 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Trre13g04568 327 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Trre13g04568 327 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Trre13g04568 327 Gene3D - 161 223 - -
Trre13g04568 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 65 281 IPR001289 GO:0003700|GO:0006355
Trre13g04568 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04568 Trre-Chr13 53142610 53145387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04568 35 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.307 1.84e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre13g04568 CBFB_NFYA 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04568 K08064 - gmx:100527677 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04568 13 53142610 53145387 Trre1g02263 1 18114263 18116662 PCT