Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g04567 | ATGGCTGCTACTACAGCTTCTGTTTCATCTTCTATCTTCAACAGAATCTACAACCTCTCATTCACTCACTCTTCCATTTTTCTCACCCCCACAAACTTCCCTCAAAGACCCATTTCGCATAAACCCTTCAATCTCATTCTCAACTATCAAAGTTTCAATCTTTTCCCTCTTCCACTTCATTCTCTCCTTCATCCCCCATTCGCCGCCGAAGTTGAATTCCAAACTTCTCAAGACATTACAATTTCACAACAAGAAGAACCAGAAACAGAAACAGAAACAGAACAAGAAACCTCTGATAAACCAAAACAAGAGGAAGGACAGAAAGTATCAACCTCAGATGATGCTGGAAGACTCTATGTTGGAAATTTGCCATTTACAATGACTTCTTCACAATTGGCTGAAATCTTTGCAGAAGCTGGCACTGTCGTGTCTGTTGAGATAGTGTATGATCGAGTTACAGACAGGAGCAGAGGATTTGCATTTGTTACAATGAAAAGTGTTGAAGAAGCTAAAGTAGCAATTCAAATGTTTGATGGTTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAATTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTGGTAATGGTGCAAAGAAATAGAGACAACTACAATGGCTTTGTAGATAGCCCTCACAAGATCTATGCTGGAAACCTTGACTGGCGACTGAACTCTCAGGATCTTAGAGATGCCTTTGCGGAACAGCCAGGCATATTGGGTGCCAAAGTCATCTATGAGAAGGACAATGGAAGATCTCGAGGTTTCGGATTTGTCACTTTTGAAACTGCTGAGGATTCACAGGCTGCTTTGAACGCTATGAACGGTGTGGAAGTTCAAGGTCGGCCCTTGCGATTGAATTCGGCATCAGACAGAACATAA | 900 | 0.42 | MAATTASVSSSIFNRIYNLSFTHSSIFLTPTNFPQRPISHKPFNLILNYQSFNLFPLPLHSLLHPPFAAEVEFQTSQDITISQQEEPETETETEQETSDKPKQEEGQKVSTSDDAGRLYVGNLPFTMTSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKVAIQMFDGSQVGGRSAKVNFPEVPKGGERLVMVQRNRDNYNGFVDSPHKIYAGNLDWRLNSQDLRDAFAEQPGILGAKVIYEKDNGRSRGFGFVTFETAEDSQAALNAMNGVEVQGRPLRLNSASDRT | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g04567 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 219 | 297 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | Gene3D | - | 69 | 200 | IPR012677 | - | |
| Trre13g04567 | 299 | SMART | rrm1_1 | 117 | 190 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | SMART | rrm1_1 | 220 | 293 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | MobiDBLite | consensus disorder prediction | 94 | 111 | - | - | |
| Trre13g04567 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 113 | 196 | IPR035979 | GO:0003676 | |
| Trre13g04567 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 297 | IPR035979 | GO:0003676 | |
| Trre13g04567 | 299 | CDD | RRM2_NsCP33_like | 220 | 295 | - | - | |
| Trre13g04567 | 299 | MobiDBLite | consensus disorder prediction | 80 | 115 | - | - | |
| Trre13g04567 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 221 | 291 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 186 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | Gene3D | - | 202 | 299 | IPR012677 | - | |
| Trre13g04567 | 299 | PANTHER | OS02G0815200 PROTEIN | 67 | 296 | - | - | |
| Trre13g04567 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 194 | IPR000504 | GO:0003723 | |
| Trre13g04567 | 299 | CDD | RRM1_PSRP2_like | 117 | 196 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g04567 | Trre-Chr13 | 53139570 | 53141115 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre13g04567 | 118 | 295 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.337 | 1.34e-14 | 72.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g04567 | - | - | tpra:123890310 | 483.026 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre13g04567 | 13 | 53139570 | 53141115 | Trre1g01685 | 1 | 13047313 | 13050005 | PCT |