Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04565 ATGAACGATTTACTCTCTGACGACAACAACAACCGCCACGTCATCCAGATGGCAGAAAACTCCACCGCAACGGCACAAACTCTCGAGAAATTCTTTGAAGAAGTTGAAGCCGTAAAAAAGGAACTAAAGGAATTAGATCAACTCCACATAAACCTCCGAAACTCACACGAAAAGAGCAAAAAACTTCACAGTGCAAAAGCAGTGAAAGAGCTTCGTTCAAAAATGGATTCCGATGTTACTCTGTCTCTCAAGAAAGCAAAACTAATCAAGTCTCGGTTGGAGTCACTTGACCGGTCCAATGAAGCGAGCCGGTCTTTGCCTGATTGTGGACCCGGTTCATCTTCCGATCGAACCCGGTCAGGGGTGGTTAGTGGTTTGAGGAAGAATTTAAAAGACTCTATGGAGAGTTTTAACGGACTTAGGGAACAGATATCGTCGGAGTATAAAGAGACCGTGCAACGGAGATACTTTACTGTCACCGGAGAGAAAGCCGATGACAAAACTGTTGACCTCCTCATCTCTACCGGTGAGAGTGAAACATTTTTACAGAAAGCAATTCAAGAGCAAGGGAGAGCAACAGTGATGGAGACAATACAAGAAATTGAGGAGAGACATGGTGCTGTGAAAGAGATAGAGAGAAATCTAAATGAGCTACACCAAGTGTTTTTGGACATGGCAGTTTTGGTTGAAGCTCAAGGTGAAGAGTTGAATGACATTGAGAGCCAAATGGCGCGAGCAAATTCATATGTTAGGGGAGGGGTCCAACAATTACATGTTGCTAGGAAACATCAAAAGAATTCTCGTAAATGGACATGTTTTGCCATTTTACTTCTCCTCATTATAGCTTTGGTTATAATTCTCCCTATTGTTTTGAAAAATAATTAG 885 0.4226 MNDLLSDDNNNRHVIQMAENSTATAQTLEKFFEEVEAVKKELKELDQLHINLRNSHEKSKKLHSAKAVKELRSKMDSDVTLSLKKAKLIKSRLESLDRSNEASRSLPDCGPGSSSDRTRSGVVSGLRKNLKDSMESFNGLREQISSEYKETVQRRYFTVTGEKADDKTVDLLISTGESETFLQKAIQEQGRATVMETIQEIEERHGAVKEIERNLNELHQVFLDMAVLVEAQGEELNDIESQMARANSYVRGGVQQLHVARKHQKNSRKWTCFAILLLLIIALVIILPIVLKNN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04565 294 MobiDBLite consensus disorder prediction 94 123 - -
Trre13g04565 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Trre13g04565 294 Coils Coil 28 55 - -
Trre13g04565 294 SUPERFAMILY t-snare proteins 28 253 IPR010989 GO:0016020|GO:0016192
Trre13g04565 294 Gene3D - 187 291 - -
Trre13g04565 294 PANTHER SYNTAXIN 31 281 IPR045242 -
Trre13g04565 294 SMART tSNARE_6 193 260 IPR000727 -
Trre13g04565 294 CDD SynN 28 185 IPR006011 GO:0016020
Trre13g04565 294 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre13g04565 294 Pfam SNARE domain 236 286 IPR000727 -
Trre13g04565 294 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 25 155 - -
Trre13g04565 294 Gene3D - 28 155 - -
Trre13g04565 294 SMART SynN_4 23 149 IPR006011 GO:0016020
Trre13g04565 294 Pfam Syntaxin 30 233 IPR006011 GO:0016020
Trre13g04565 294 CDD SNARE_syntaxin1-like 197 257 - -
Trre13g04565 294 MobiDBLite consensus disorder prediction 102 122 - -
Trre13g04565 294 FunFam Syntaxin 132 191 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04565 Trre-Chr13 53131632 53133033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04565 17 272 SNARE and Associated Proteins AT3G11820 68.872 1.81e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04565 K08486 - gmx:100808718 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04565 13 53131632 53133033 Trre1g02270 1 18155902 18157061 PCT