Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04562 ATGGATCATGATGAGATCGACATCGATGTTCCTTCATTCTTTGTTTGTCCTATATCATTAGAAATCATGAAAGATCCGGTAACGGTATCAACCGGTATAACTTACGATAGAGAAAGTATCGAAAAATGGTTGATTTCTAAGAAAAACAAAACATGTCCTGTTACAAAACAACAGTTATCAGATTACACTGATCTTACACCTAACCATACACTTAGAAGACTAATTCAAGCATGGTGCACATTAAATGCTTCACAAGGAGTTGAAAGAATTCCAACACCAAAACCACCAACCAACAAAACACAAATCACAAAACTCATCAAAGAAGCTTCTCATTCTTCTCTCACCATTCAGATTAATTGTCTTAAAACACTTAGATCAATTGCTTCTGGAAGTGAAACAAATAAACGTATCATGGAAGATGCAGGTGTTGTTGAGTTTTTAGCTTCTATTGTAATAAACAATAGTTGTAACATTGACCCTGCATCTTTGTTATCTGAGGTTAACATTAATCCTGTGGATGAAGCATTAAGCATACTTCATAATCTTCATGTTTCCGAGACTGGATTGAAGAATCTTCTAGCTTTTAGAAACGGCGAATTTATTGAGTCATTAACAAAAGTTATGCAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGTTAAAATCTATGTCACAAGTAGCAGAAGCAGTGCAGTTACTACATCAAAAAACTGAACTGTTTGTTGAACTGGTTCAAGTTTTGAAGGATCAAATTTCTCAAAAGGTATCAAAAGCTACACTTCAGACATTGATTGAACTTTGTCCATGGGGAAGAAACAGAATCAGAGGTGTTGAAGCAGGAACAGTTCCTGTTTTGATAGAACTTTTATTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGTTAGTTTTGTTGGAGAATCTTTGTCAATGTGCTGAAGGAAGAGCTGAACTTTTGAAACATGCAGCTGGTCTAGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACGCTCGCGAATGATAGAGCTGTGAGGATTCTGTTGTCTGTTTCTAAATTCTCTGCAACTCCTAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACAAAAGAGAAAGCTAGGGAGATTCTTAAGATGCATGCTAGGGCATGGAGGAATTCTCCATGTATACCTAGTAATTTGCTATCTTCATACCCCAATTATGCATGA 1266 0.357 MDHDEIDIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLISKKNKTCPVTKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGVERIPTPKPPTNKTQITKLIKEASHSSLTIQINCLKTLRSIASGSETNKRIMEDAGVVEFLASIVINNSCNIDPASLLSEVNINPVDEALSILHNLHVSETGLKNLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSQVAEAVQLLHQKTELFVELVQVLKDQISQKVSKATLQTLIELCPWGRNRIRGVEAGTVPVLIELLLENCKDRKPNEMMLVLLENLCQCAEGRAELLKHAAGLAVVSKKILRVSTLANDRAVRILLSVSKFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04562 421 SUPERFAMILY RING/U-box 4 83 - -
Trre13g04562 421 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Trre13g04562 421 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Trre13g04562 421 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Trre13g04562 421 FunFam RING-type E3 ubiquitin transferase 3 88 - -
Trre13g04562 421 Gene3D - 94 408 IPR011989 -
Trre13g04562 421 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Trre13g04562 421 SUPERFAMILY ARM repeat 102 397 IPR016024 -
Trre13g04562 421 CDD RING-Ubox_PUB 11 61 IPR045210 -
Trre13g04562 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04562 Trre-Chr13 53088277 53089542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04562 7 418 U-box Gene Family AT3G52450 57.275 7.82e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04562 - - mtr:25499491 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04562 13 53088277 53089542 Trre13g04562 13 53088277 53089542 ECH
Trre13g04562 13 53088277 53089542 Trre1g02289 1 18312813 18314123 PCT
Trre1g02288 1 18302890 18304565 Trre13g04562 13 53088277 53089542 PCT