Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04560 ATGGCAGCTTATTTTCATGGTAATTCTGAAATCCAATCAAGTGGCGGCGGCGGTGGCGCCGACGGACTTCAAACACTTGTTCTAATGAATCCAAGCTATATGCAATATTCAGACAACTCACAGCAACAACAAGCTCAACAACCTTCTCATGCCGCCGCTGCCGGTAACTTTGTTTTTCTCAACTCAACAGCTGCAGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACACACAGCAATTCGTCGGCATCCCTCTCGGCAACCAACACCAAATCCACGCGCACCACCATGACGTTGTTCCTTCCTTGCATGGATTCCTTCCTCACATGCAGTACAATCAGTGGAACACAATTGACCCAAATACAGCCGCGCGTGAAACTCCACGCGCTCAACAAGGACTGTCTTTAAGCCTCTCTTCACAGCCAGCACGGTTTATGTCCTTTCGCAAGGGTGCTATGTCTGGTGGATCGCCGTCAACACCGGCTTCCGGAGTTACTACTAATAATAATAACAACAATGGGAATTCAGGGATTCAGGTTTTGAGTTCAAAGTATTTGAGAGCAGCGCATGAGCTTTTAGAAGAGGTTGTGAATGTTAATGTTGGTGTCGAATTGGGTAATAAAAAGAGTGGTGGATTGAACAAGGTGATCGGAGAATCGTCGGGAGTTGGAAGTGGAGGAGATGGATCAATTGTTGGTGGTGGTGGTGGTGAAGGAAGTGGGAAGCGGAGCACCGAGCTATCAACGGCGGAGAGACAAGAATTACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAGGTGGCACAAAGGTACAGGCAATATCACCATCAAATGGAGGTTGTGGTCTCCTCATTTGAACAAGCCGCCGGCCTTGGTTCCGCGAGGACATACACTGCTCTTGCACTGCAAACAATCTCGAAACAATTTCGGTGTTTGAAAGATGCCATAACAGGACAAATTAAAGCTACAAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGTGGTAAAATTGAAGGTTCAAGGCTTAAATATGTTGATCATCAACTACGTCAACAACGTGCTCTACAACAGTTGGGAATGATCCAACACAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTTCTTCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGTCTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTAGGCTTTGGAAACCTATGGTTGAAGAAATGTACTTAGAGGAAATGAAAGAGAATGAACTAAATGGATCAGAAGAAAAATCAAGCAAGAGCAATGAAGATTCATCTATGAAAGTTCCATCCCCTCAAGAGAAAGGTCTTAACACTGAAACAGAACCTAAAGGTTACAATTCTACACAAGACATTTCTCAAAGCCAAGACACATCAATGATTTCTGTTTCTAGACCACAAACATCACCACATGTTGGAAATGTTAGAAACCAATCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGTATACCACAAACAAGTCCTAAAAAACCAAGGAACCATGAACTTATCCATAATCCTAATAGTTTCATTGATGTTAAGCATAATGAGGCAAATAATGAGATAAAATTTGGTGATGAGAGACAAAATAGAGATGGATACTCTTTTATGGGAAACCAAACAAATTTCATTGGTGGATTTGGACAATACCCAATTGGTGATATTGGTAGATTTGATCAAGAACAATTCACACCAAGGTTTTCAAGTAATGGTGTTTCACTCACTCTTGGTCTTGACTCAATACAAGGAAATCATCAACATCAAACATTTATACCAAACCAAAACATTCAACTAGGAAGAAGCATTGACATAAGTGAACCAAATGAGTTTGGTTCCATAAACACTTCCTCTCCTCAATATGAAAATATCAACATGCAAAACCCAAAAAGGTTTGCTGCACAATTGTTACCAGATTTTGTGGCCTAA 2031 0.418 MAAYFHGNSEIQSSGGGGGADGLQTLVLMNPSYMQYSDNSQQQQAQQPSHAAAAGNFVFLNSTAAENNSFSPHAPPSNTQQFVGIPLGNQHQIHAHHHDVVPSLHGFLPHMQYNQWNTIDPNTAARETPRAQQGLSLSLSSQPARFMSFRKGAMSGGSPSTPASGVTTNNNNNNGNSGIQVLSSKYLRAAHELLEEVVNVNVGVELGNKKSGGLNKVIGESSGVGSGGDGSIVGGGGGEGSGKRSTELSTAERQELQMKKAKLITMLDEVAQRYRQYHHQMEVVVSSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNGSEEKSSKSNEDSSMKVPSPQEKGLNTETEPKGYNSTQDISQSQDTSMISVSRPQTSPHVGNVRNQSGFSFIGSSELEGIPQTSPKKPRNHELIHNPNSFIDVKHNEANNEIKFGDERQNRDGYSFMGNQTNFIGGFGQYPIGDIGRFDQEQFTPRFSSNGVSLTLGLDSIQGNHQHQTFIPNQNIQLGRSIDISEPNEFGSINTSSPQYENINMQNPKRFAAQLLPDFVA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04560 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 456 - -
Trre13g04560 676 MobiDBLite consensus disorder prediction 441 456 - -
Trre13g04560 676 SMART prehox3 176 321 IPR006563 -
Trre13g04560 676 MobiDBLite consensus disorder prediction 152 177 - -
Trre13g04560 676 SUPERFAMILY Homeodomain-like 370 436 IPR009057 -
Trre13g04560 676 SMART HOX_1 369 433 IPR001356 GO:0003677
Trre13g04560 676 MobiDBLite consensus disorder prediction 441 512 - -
Trre13g04560 676 Pfam Associated with HOX 181 320 IPR006563 -
Trre13g04560 676 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
Trre13g04560 676 Coils Coil 253 273 - -
Trre13g04560 676 CDD homeodomain 369 430 IPR001356 GO:0003677
Trre13g04560 676 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Trre13g04560 676 Gene3D - 372 451 - -
Trre13g04560 676 MobiDBLite consensus disorder prediction 457 512 - -
Trre13g04560 676 FunFam BEL1-like homeodomain protein 9 372 434 - -
Trre13g04560 676 MobiDBLite consensus disorder prediction 154 177 - -
Trre13g04560 676 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04560 Trre-Chr13 53058484 53063259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04560 1 676 Homeobox Transcription Factor Family AT2G35940 48.667 3.48e-166 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre13g04560 POX 3.2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04560 - - gmx:100810901 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04560 13 53058484 53063259 Trre13g04560 13 53058484 53063259 ECH