Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04557 ATGAACAACCACCGCACAACAACACTCCTCTTCTTCCTCTTCCTTCTCTCACCATCTCTAATCCTCACAACAACCCACCCAGACGACCTTAAAATCCTCAACGATTTCAAAAACAACCTAGACAACCCCGAACTCTTACAATGGCCAAAACAAAGTAACGACCCATGTGGTCCCCCTTCATGGAAATTCATCTTCTGCGACGGTGACAGAGTCACACAAATTCAAACCAAAAACTTAAACCTTTCTGGTACTTTACCACAAAATCTAAACCAACTCACTCAACTCTTCAATTTGGGTCTTCAAAACAACAAACTCCACGGTCCATTACCGTCGCTAAATGGGTTATCAAATCTCAAATTTGCTTATCTTGATAACAATCAATTTGACTCTATCCCTTTTGATTTCTTTCAAGGGTTATCTAGTTTAGAGATTCTTGCATTAGATAACAACAATCTCAATGTTACTACAAATGGTTGGCAATTTCCTTCTTCTTTGTTGGATTCACCTCAGTTGAAAACTTTATCTTGTATCAGCTGTAATTTGGCTGGTGTTTTACCGGATTTTCTTGGTAAAATGAACTCTCTTTCGTATTTGAAACTTTCCGGTAACAGTTTATCCGGTGAGATTCCGGTGAGTCTTAATGGTTCTGGTTTGCAGACTTTATGGTTGAATAATCAAAAGGGTGAGTTACTATCTGGGAATATTGATGTTGTTGCTACTATGGTTTCTCTTACTAGTTTATGGCTTCATGGGAACAGGTTCACCGGTTCGATTCCGGAGAATATTGGTGACTTGGTTTCTTTAAAAGATCTTAATCTTAATGGTAATGAACTTGTTGGACTTGTTCCTAAGTCTTTAGGTGATTTGGAATTGGATAATCTTGATTTGAATAATAATCGGTTTATGGGTCCGATTCCGAGTTTTAAAGCTTCTAAAGTTTCTTATAGTAATAATGATTTTTGTTTGAATCAAACTGGTGTTCCTTGTTCTTTTGAAGTTATGGCTCTTTTGGGTTTTCTTGGTGGGTTGAATTATCCTTCAAATTTGGTTGATTCATGGATTGGGAATAACCCTTGTGAGAGTTGGTTGGGGATAAAATGTAATACTGATGGTAAAGTTTCTATGATTAATATGCAGCATTTTAATCTTAATGGTACTTTAAGTCCTTCTGTTGCAAATTTAGGTTCTTTAGCTGAAATTAGATTGGGGGGTAATAATCTCAATGGTGTAGTGCCTAGTAATTGGACTGGATTGATGAAGTTGAATTTGTTGGATCTGACTGACAATAATATTTCTCCTCCTATGCCGGTTTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATTCTCTGTTAAATGGTGGTGGCTCGAACAGTCCTTCGTCGGGGAAAAACGGTACATCGGGTGGATCTGGGAATATTGGTGGAGATACACATGGACACTCGAATTCAAGTTCAAGCGATTCGGTTGAAACGAAAAAATCCAAAAGGAAAGGGTTGGTTTTGATTGTAGCTCCCATTGCTGGTGTGGCGGCTGCTGCATTTCTGTTGATACCGCTTTACGCGTATTGTTTCAGGAGGACAAAGGATGGCTTCCAGGCTCCAAGTTCACTTGTAGTTCACCCTAGAGATCCATCTGATTCGGACAGTACAGTAAAGATAGCTATTGCTAATAATACCAATGGAAGTGTTTCCACTTTGACAGGGAGTGGAAATGGGAGTAGAAACAGCAGTGCAATTGGCGATTCTCATGTCATTGAAGCTGGAAATCTTGTCATATCCGTTCAAGTTCTAAGAAACGTGACAAAGAATTTCGCCCCTGAGAATGAGCTCGGCCGCGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGGACTAAGATTGCGGTAAAAAGAATGGAATCAGGTGTGATCACCAATAAAGCCTTGGATGAATTTCAGGCTGAAATTGCAGTTCTGTCGAAAGTTCGACATCGACATCTAGTGGCCCTTATTGGTTATTCCACTGAAGGTAATGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGTGCTCTCAGTCAGCATCTTTTCCATTGGAAGAGCTTTGGACTTGAGCCTCTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTCGCTAGAGGAATGGAGTATCTTCATACTCTAGCTCACCAGAGCTTCATTCATAGAGATCTTAAGTCCTCAAATATATTGCTTGCCGATGATTTTAGAGCTAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTAATGGCGAAAAATCTGTAGTGACCAAACTTGCTGGAACCTTTGGATACTTGGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGTAGATGTTTTCAGTTTTGGTGTTGTGCTAATGGAGCTGTTATCTGGATTGATGGCACTTGATGAGAGTAGACCTGAGGAAAGCCAATACTTAGCGGCATGGTTCTGGAATATAAAATCAGATAAGAAGAAACTAATGGCTGCTATTGACCCAACCCTCGACATAAACGAAGAAACATTCGAGAGCGTTGCAATTATTGCCGAGTTAGCCGGACACTGCACGGCTAGAGAACCAAACCAAAGGCCAGAAATGGGTCATGCTGTCAATGTTCTTGCACCACTTGTTGAAAAATGGAAACCGTTTGACGATGACCCTGACGAGTATTCCGGCATCGATTATAGTCTTCCCCTTAATCAGATGGTGAAAGGATGGCAAGAAGCGGAAGGAAAGGACACAAGTTATATGGACCTAGAAGACAGCAAGAGTAGTATCCCCGCAAGACCGACTGGATTTGCAGATTCTTTTACTTCGGCTGATGGCCGGTGA 2856 0.4062 MNNHRTTTLLFFLFLLSPSLILTTTHPDDLKILNDFKNNLDNPELLQWPKQSNDPCGPPSWKFIFCDGDRVTQIQTKNLNLSGTLPQNLNQLTQLFNLGLQNNKLHGPLPSLNGLSNLKFAYLDNNQFDSIPFDFFQGLSSLEILALDNNNLNVTTNGWQFPSSLLDSPQLKTLSCISCNLAGVLPDFLGKMNSLSYLKLSGNSLSGEIPVSLNGSGLQTLWLNNQKGELLSGNIDVVATMVSLTSLWLHGNRFTGSIPENIGDLVSLKDLNLNGNELVGLVPKSLGDLELDNLDLNNNRFMGPIPSFKASKVSYSNNDFCLNQTGVPCSFEVMALLGFLGGLNYPSNLVDSWIGNNPCESWLGIKCNTDGKVSMINMQHFNLNGTLSPSVANLGSLAEIRLGGNNLNGVVPSNWTGLMKLNLLDLTDNNISPPMPVFSNGLKPMVDGNSLLNGGGSNSPSSGKNGTSGGSGNIGGDTHGHSNSSSSDSVETKKSKRKGLVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSTVKIAIANNTNGSVSTLTGSGNGSRNSSAIGDSHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMESGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSTEGNERILVYEYMPQGALSQHLFHWKSFGLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLADDFRAKVSDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDESRPEESQYLAAWFWNIKSDKKKLMAAIDPTLDINEETFESVAIIAELAGHCTAREPNQRPEMGHAVNVLAPLVEKWKPFDDDPDEYSGIDYSLPLNQMVKGWQEAEGKDTSYMDLEDSKSSIPARPTGFADSFTSADGR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04557 951 CDD STKc_IRAK 611 884 - -
Trre13g04557 951 MobiDBLite consensus disorder prediction 451 489 - -
Trre13g04557 951 FunFam receptor protein kinase TMK1 567 682 - -
Trre13g04557 951 Pfam Protein tyrosine and serine/threonine kinase 608 879 IPR001245 GO:0004672|GO:0006468
Trre13g04557 951 ProSitePatterns Protein kinases ATP-binding region signature. 611 633 IPR017441 GO:0005524
Trre13g04557 951 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre13g04557 951 Pfam Leucine rich repeat N-terminal domain 333 368 IPR013210 -
Trre13g04557 951 ProSiteProfiles Protein kinase domain profile. 605 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04557 951 FunFam Receptor-like kinase TMK4 27 326 - -
Trre13g04557 951 SUPERFAMILY Protein kinase-like (PK-like) 583 881 IPR011009 -
Trre13g04557 951 SMART serkin_6 605 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04557 951 Gene3D Ribonuclease Inhibitor 331 453 IPR032675 -
Trre13g04557 951 SUPERFAMILY L domain-like 25 309 - -
Trre13g04557 951 SUPERFAMILY L domain-like 333 438 - -
Trre13g04557 951 FunFam receptor protein kinase TMK1 683 900 - -
Trre13g04557 951 Gene3D Phosphorylase Kinase; domain 1 569 682 - -
Trre13g04557 951 Gene3D Ribonuclease Inhibitor 27 327 IPR032675 -
Trre13g04557 951 FunFam Leucine-rich repeat receptor-like kinase 331 454 - -
Trre13g04557 951 Pfam Leucine rich repeat 243 301 IPR001611 GO:0005515
Trre13g04557 951 MobiDBLite consensus disorder prediction 921 951 - -
Trre13g04557 951 MobiDBLite consensus disorder prediction 449 492 - -
Trre13g04557 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Trre13g04557 951 Gene3D Transferase(Phosphotransferase) domain 1 683 897 - -
Trre13g04557 951 PANTHER OSJNBA0070M12.3 PROTEIN 10 951 - -
Trre13g04557 951 SMART LRR_typ_2 394 417 IPR003591 -
Trre13g04557 951 SMART LRR_typ_2 192 216 IPR003591 -
Trre13g04557 951 SMART LRR_typ_2 115 138 IPR003591 -
Trre13g04557 951 SMART LRR_typ_2 139 168 IPR003591 -
Trre13g04557 951 SMART LRR_typ_2 241 264 IPR003591 -
Trre13g04557 951 SMART LRR_typ_2 265 288 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04557 Trre-Chr13 52989238 52992799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04557 81 918 Receptor kinase-like Gene Family AT1G55610 29.877 8.77e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre13g04557 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04557 - - gmx:100305366 1399.42