Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04547 ATGGCTGATAGGTACTCCCAATTGAACGGTGCCTTCTATGGCCCCGCCATACCACCAACGACGGAGCAACGTCACTCTAGCTACCGCCGTGATAGAAGTTGTTGTGGTTGTCTCTTTAACATCTTTTGGAAGATTGTTGTCGCACTCGCGATTCTCTTTGGGCTCATAATTATTATCTTTTATCTCATTGTTCAACCTCGCACCTTTAAGTTTTATGTCACAAAAGCTCAACTAACCCAATTTGATTACACAAACAACACACTACACTACAACATGGTGCTCAATTTCACAGCACGCAACCCAAACAAAAAACTCGGTATCTATTACGATGATGTGGAGGCTCGAGCATTCTATGAAGGGTCGAGGTTTGCGAATGTTGATGTGATCACATACAAGAACTCATTCCGCCAAGACAAGAAGAAAAGTGATCGGTGA 435 0.4322 MADRYSQLNGAFYGPAIPPTTEQRHSSYRRDRSCCGCLFNIFWKIVVALAILFGLIIIIFYLIVQPRTFKFYVTKAQLTQFDYTNNTLHYNMVLNFTARNPNKKLGIYYDDVEARAFYEGSRFANVDVITYKNSFRQDKKKSDR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04547 144 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 22 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04547 Trre-Chr13 52899572 52903392 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04547 63 126 SNARE and Associated Proteins AT1G32270 40.000 4.39e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04547 - - tpra:123889192 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04547 13 52899572 52903392 Trre13g04547 13 52899572 52903392 ECH
Trre13g04547 13 52899572 52903392 Trre1g02310 1 18525800 18526423 PCT