Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04544 ATGCAAGCAAGTATGGAAGATATGCAACCTCAATTGGCCGCAGGCCAATCTAGGAGTTGCATTCTCTTCAAAAACTTCTGCAAACTTCTCTTTGGACTTGTCGTCCTCTTCGGTATCATAACCATTATACCCTTTCTCATTGTTCTACGTCTACCCCACCGCTTCAAATTCAATGTCACGAAAGCCGAGCTAACCCAATTTGACTACAACAACAATACACTGCACTACAACATGGTGCTCAACTTCACAACTCGTAACCCAAACAAAGAGATAAGCATATATTACGATGAAGTGGAGGCTCGAGCATTCTATGAAGAGTCAAGGTTTGCAAATGTCGAAGTGATCAAACAATACAAGAACTCGTTTCGCCAACACAAGAAAAGTAGTGATTCTATGAGTGGCGTTTTCTCAGGACAACAATTGTTGATGCTCAACAATGATCAGATCTCTCAGTTCAACAAAGATAAGAGCGTTGGAGTTTTTGATATTCATGTGAAACTCAACTTCAGAATTAGGTTTAAACTTGGATTCGTGATATCTCACAAGTATAGGCCCGAGGTGAAATGTGACATTAAAGTTCCATTGAGCTCTAGCAAAAATATTGAAACATTTACCTTCACCTCCAACAAGTGCAAAGTTGCAATAGGACGTTCACGTTCTACTTAA 666 0.3979 MQASMEDMQPQLAAGQSRSCILFKNFCKLLFGLVVLFGIITIIPFLIVLRLPHRFKFNVTKAELTQFDYNNNTLHYNMVLNFTTRNPNKEISIYYDEVEARAFYEESRFANVEVIKQYKNSFRQHKKSSDSMSGVFSGQQLLMLNNDQISQFNKDKSVGVFDIHVKLNFRIRFKLGFVISHKYRPEVKCDIKVPLSSSKNIETFTFTSNKCKVAIGRSRST 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04544 221 PANTHER OS05G0367900 PROTEIN 23 198 IPR044839 GO:0098542
Trre13g04544 221 Pfam Late embryogenesis abundant protein 82 189 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04544 Trre-Chr13 52893320 52893985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04544 56 196 SNARE and Associated Proteins AT1G32270 34.507 6.58e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04544 - - psat:127129872 276.174