Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04543 ATGCAACCCCAGTTGAACGATTCATACTATGGGCCGGCCATTCCACCGGCAGGAGGACATTCCCGCAATCGCCACCACAGTGGTGGAAACGGTTGCGGTTGTCTCTTTAGCATCTTATGGAAGCTTCTAGTTGCACTCGTCGTTCTTTTTGGTCTTATAACTCTTATCTTCTATCTTATTGTTCAACCTCGCCCCTTCAAGTTTTATGTAGCGAAAGCTGAACTAACCCAGTTTGATTACGCCAACAACACACTACACTACAACATGGTTCTCAATTTCACAGCTCACAACCCAAATAAAAAACTTAGTATCTACTATGATAAAGTCGAAGCACGAGCATCATATGAAGGGTCGAGGTTTGCTAATGTTGATGTGATCACACACATGAACTCATTTCGCCAAAATAAGAAAAGTAGTGATCCCATGAGTGGCATTTTCTCAGGACAGAAATTGTTGATGCTTGACAATGATCAAATCTCTAAGTTTAACAAAGATACAAATGTTGGAATTTATGATATCTATGTGAAACTCTATTTCAGGATTAGGTTCAAACTCGGAGATTCGATAACTCGCACGTACAAACCTAAGGTCAAATGTGACCTCACTGTTCCTTTGAGAACCCGCTATGAAACTAACTTTACCTTCATTCGACTTATACCCACCAAGTGCAGTGTTGAGTTCTAG 684 0.4094 MQPQLNDSYYGPAIPPAGGHSRNRHHSGGNGCGCLFSILWKLLVALVVLFGLITLIFYLIVQPRPFKFYVAKAELTQFDYANNTLHYNMVLNFTAHNPNKKLSIYYDKVEARASYEGSRFANVDVITHMNSFRQNKKSSDPMSGIFSGQKLLMLDNDQISKFNKDTNVGIYDIYVKLYFRIRFKLGDSITRTYKPKVKCDLTVPLRTRYETNFTFIRLIPTKCSVEF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04543 227 PANTHER OS05G0367900 PROTEIN 39 210 IPR044839 GO:0098542
Trre13g04543 227 Pfam Late embryogenesis abundant protein 93 199 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04543 Trre-Chr13 52889767 52890450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04543 60 205 SNARE and Associated Proteins AT1G32270 34.694 5.75e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04543 - - gmx:100807701 306.219