Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04542 ATGGCTGATAACAAGAATCCACAACTAAACGGTGCCTACTATGGGCCGGCGATTCCACCACCGACACAACCCCGCTACAACCATCGCCGAAGTAGAAGTTGTTGTTCCTGTCTCTTCGGTTTCATCTGGAAGCTCCTAGTCACACTTATCGTTCTTGCTGGCCTCGCGGTCCTTATATTCTATCTCATTGTTCAACCACGCTCTTTTAAATTCTATGTCACGGAAGCCAATTTAACTAAATTCGACTATACAAACAACACACTACACTACGACATGGTGCTCAACTTCACTGCCCGCAACCCAAACAAAAAGCTCAGCATCTACTACGACAAAGTGGAGGCTCGGGCATTCTACGAAGGGGAAAGATTTGCAAATGTCGATGTCCCCGTATCATTTCGCCAATACAAGAAAAGCAGTAATCCCATGAGCGGTGTTTTCTCTGGACAGCAATTGTTGATGCTCGACAATGATCAAGTTTCGGAGTTCAATAAAGATAAGAATGTTGAAGTTTATGATATCTATGTGAAGCTCTACTTCAGGATTAGATTTAGACTCGGAGATTTAATATCGGGTGATTACAAACCCAAGGTGAAATGTCACCTCAAAGTTCCATTGACTTCGAACAATACCACCGCAACGTTCACTCCACTTGTGCCTACCAAGTGCGATGTTGATTTCTACTAA 684 0.4357 MADNKNPQLNGAYYGPAIPPPTQPRYNHRRSRSCCSCLFGFIWKLLVTLIVLAGLAVLIFYLIVQPRSFKFYVTEANLTKFDYTNNTLHYDMVLNFTARNPNKKLSIYYDKVEARAFYEGERFANVDVPVSFRQYKKSSNPMSGVFSGQQLLMLDNDQVSEFNKDKNVEVYDIYVKLYFRIRFRLGDLISGDYKPKVKCHLKVPLTSNNTTATFTPLVPTKCDVDFY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04542 227 PANTHER OS05G0367900 PROTEIN 32 209 IPR044839 GO:0098542
Trre13g04542 227 Pfam Late embryogenesis abundant protein 96 194 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04542 Trre-Chr13 52887585 52888268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04542 63 218 SNARE and Associated Proteins AT1G32270 34.591 7.63e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04542 - - gmx:100807701 341.273