LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04541	ATGGCTGATAACAAGCAACCACAATTAAATGGTGCCTACTATGGCCCCGCAATTCCACCACCAGCACAACCTCGCTACAGCCATCGCCGAAGTAGAAGTTGTTGTTCTTGTCTCTTCGGTTTCATCTGGAAGCTCCTAGTCACAATTATCGTTCTTGCTGGCCTCGCGGTCCTTATATTCTATCTCATTGTTCAACCACGCTCCTTCAAATTCTATGTCACGGAAGCCAATCTAACTAAATTCGACTACACAAACAACACATTACACTACGACATGGTGCTCAACTTCACTGCTCGCAACCCAAACAAAAAACTCGGAATCTATTACGATGATGTGAAGGCTCAAGCATTCTATGAAGGGTCAAGATTTGCTATTGTAGATGTGATCACATTCAAGAACTCGTTCCGCCAAGACAAGAAGAGAAGTGATCCTATGAGTGGCGTTTTCACAGGACAACAACTGTTGATGCTCGACAATGATCAAGTCTCTGAATTCAATAAAGATAAGAATGTTGAAGTTTATGATATCTATGTGAAGCTCTACTTCAGGATTAGGTTTAGACTCGGAGATTTGATATCGGGTGGTTACAAACCCAAGGTGAAATGTCACCTCAAAGTTCCGTTGACTTCAAACAATACCACCGCAGCATTCACTCCACTTTTGCCTACCAAGTGCGATGTTGATTTCTACTAA	693	0.4242	MADNKQPQLNGAYYGPAIPPPAQPRYSHRRSRSCCSCLFGFIWKLLVTIIVLAGLAVLIFYLIVQPRSFKFYVTEANLTKFDYTNNTLHYDMVLNFTARNPNKKLGIYYDDVKAQAFYEGSRFAIVDVITFKNSFRQDKKRSDPMSGVFTGQQLLMLDNDQVSEFNKDKNVEVYDIYVKLYFRIRFRLGDLISGGYKPKVKCHLKVPLTSNNTTAAFTPLLPTKCDVDFY	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04541	230	Pfam	Late embryogenesis abundant protein	96	195	IPR004864	-
	Trre13g04541	230	PANTHER	OS05G0367900 PROTEIN	32	211	IPR044839	GO:0098542

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04541	Trre-Chr13	52885391	52886083	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g04541	63	221	SNARE and Associated Proteins	AT1G32270	33.735	7.10e-22	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04541	-		-	gmx:100795302	318.931