Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04540 ATGGTGCTCAACTTCACTGCGCGCAACCCAAACAAAAAGCTCAGCATCTACTATGACGAAGTGGAGGCTCGGGCATTCTACGAAGGGCAAAGGTTTGCAAATGTCAATGTCCCCGTATCATTTCGTCAATACAAGAAAAGCAGTAACCCCATGAGGGGTGTTTTCTCAGGACAACAATTGTTGATGCTCGATAATGATCAAGTCACTGAGTTCAATAAAGATAAGAATGTTGAAGTTTATGATATCTATGTGAAGCTCTACTTCAGGATTAGGTTTAGACTCGGGGATGTGATATCCAGTAATTACAAGCCCAAGGTGAAATGCCACCTCAAAGTTCCGTTGATTTCTAAGAATACCACTGCAAGATTCACTCGACTTGTCCCAACCAAGTGCGATGTTGATTTCTACTAA 411 0.4209 MVLNFTARNPNKKLSIYYDEVEARAFYEGQRFANVNVPVSFRQYKKSSNPMRGVFSGQQLLMLDNDQVTEFNKDKNVEVYDIYVKLYFRIRFRLGDVISSNYKPKVKCHLKVPLISKNTTARFTRLVPTKCDVDFY 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04540 136 Pfam Late embryogenesis abundant protein 5 104 IPR004864 -
Trre13g04540 136 PANTHER OS05G0367900 PROTEIN 3 114 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04540 Trre-Chr13 52877504 52877914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04540 1 127 SNARE and Associated Proteins AT1G32270 33.333 1.08e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04540 - - gmx:100807701 197.978