Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04539 ATGGGTGTTGCTTCAAATGGTGGTGGTTATAGAACCACTACACACCCTTACAAGTTGAACTTTCAGTACTCATCCACTGTTCAGCATTTGCCTTCCTTGCAAATCACAAAGTCACCTTACCATTTTGTTCCAATATCTGACATTATTGGTGGTGGATATGACACTGATTATTTGCCCGATGTTATTGGTGTTTTGACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAATAACTTCATTGCTGCCGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGATAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACTAAGAGTCAGTACTTTAGAAGAATTCCTGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTTGTGCTTGGAACTATTAAAAAAAAATTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGGTTTTGTATCAAAGTGAGAGTTTTGGACAACACTGATTGTGGATCTTTTGTGATCTTTGACAATGATGCATCTCTTCTTTTCCGCGAGACATGCCAAGATGTGCTGGATTCCATTCCTAGAGGTTCTCCTGTTGGCTTTCTTCCAAATGAGGTTGCTGGTTTGGTTGACCAGACCTTACTCTTCAAGGTTGAGACAAAAGCCAAGTTCAACATGAGGTTTGAACAAAGTTTTCGTGTTAGAAAAATCTGTAAGGATGCAAATGTCATAACTGAGTTTAAAAAGAAATGGGATACCGAAGATGCTTCTTTCTCTAAATCTTCTAATGAAAATGCTTCATTGTCAACCTTAATGGACAAAGGGAAACAACTTTTGCTTGAAGGACCTTCTGATGGTTTAAGTCAGGATATTGTTTGTCTATCTTCCCCAAATCCTATGCTTAAAGGCAATGTTGGTGAGGGTTCTGACTCTATTAAAGAGGATTTGATGACCAAATTCGGTCAATTATACGTAGCTGTATCTAGAGTAACAACTAAAAAAGACCATAAGGAGAAAGTAGCTGATTTCAAGGAAATATTCAAGCCAAAGGAGATGAAATTTCACTAA 1377 0.382 MGVASNGGGYRTTTHPYKLNFQYSSTVQHLPSLQITKSPYHFVPISDIIGGGYDTDYLPDVIGVLTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNNFIAAGDVQNAVVIIQLAKVKNFQDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAELRVSTLEEFLYNTPRTTIQGLKDATTDSLFVVLGTIKKKLNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPRFCIKVRVLDNTDCGSFVIFDNDASLLFRETCQDVLDSIPRGSPVGFLPNEVAGLVDQTLLFKVETKAKFNMRFEQSFRVRKICKDANVITEFKKKWDTEDASFSKSSNENASLSTLMDKGKQLLLEGPSDGLSQDIVCLSSPNPMLKGNVGEGSDSIKEDLMTKFGQLYVAVSRVTTKKDHKEKVADFKEIFKPKEMKFH 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04539 458 CDD RPA1_DBD_C 210 353 IPR047192 -
Trre13g04539 458 Gene3D - 34 170 IPR012340 -
Trre13g04539 458 SUPERFAMILY Nucleic acid-binding proteins 40 164 IPR012340 -
Trre13g04539 458 SUPERFAMILY Nucleic acid-binding proteins 194 340 IPR012340 -
Trre13g04539 458 CDD RPA1_DBD_B_like 60 162 - -
Trre13g04539 458 Gene3D - 187 352 IPR012340 -
Trre13g04539 458 Pfam Replication factor-A C terminal domain 214 292 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04539 Trre-Chr13 52873956 52876522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04539 17 269 Core DNA Replication Machinery Family AT2G06510 26.766 2.11e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04539 - - tpra:123915045 509.22