Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04527 ATGTCTGGCTCCAGAAAGAAGCTTATTCTGAACACTGTGTCGGTGAAACTAGGCTGTGGAAGCTGCAGAAAGCTAAAGCTAAGTAACATATTCAACCCAAAACCAAAACCCAAGAACCCCACTTACCAAAAACACAAACTTTACAATAACCAGTACTCCTCTTCTTCAGGTCCTTGGAGTAGTGCTGAAGACAAATATGACAGTACAAGCACTCCAAATACCACCACTACTACTACCAACACTGCCACCACATTTTCACCCTTGTATCAATCAAACTTTTCTGATTCAGAGACCTATGCAAAGGACCAGAGAAGAGTAGGAGGTTTAGGTAGAGCTGGAGGAGAAGGTGTTGCTGTGGAGAAAGATTCTGAAGATCCTTATCTTGATTTCAGACATTCCATGCTTCAAATGATATTGGAGAATGAGATATACTCAAAAGATGATCTTAGAGAGCTTCTGAATTGCTTTCTTCAGCTCAATGAACCATATCACCATGGTGTTATAGTCAGAGCTTTTACTGAGATTTGGAATGGTGTCTCTTTGAGGTCTAGTTCATCCAGGGTTCATACAACTCGGGCCCGTAAGCCACGCAGACATTAA 600 0.4167 MSGSRKKLILNTVSVKLGCGSCRKLKLSNIFNPKPKPKNPTYQKHKLYNNQYSSSSGPWSSAEDKYDSTSTPNTTTTTTNTATTFSPLYQSNFSDSETYAKDQRRVGGLGRAGGEGVAVEKDSEDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNEPYHHGVIVRAFTEIWNGVSLRSSSSRVHTTRARKPRRH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04527 199 Pfam Transcriptional repressor, ovate 123 178 IPR006458 -
Trre13g04527 199 NCBIfam uncharacterized plant-specific domain TIGR01568 117 177 IPR006458 -
Trre13g04527 199 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 53 181 IPR038933 GO:0045892
Trre13g04527 199 ProSiteProfiles OVATE domain profile. 119 178 IPR006458 -
Trre13g04527 199 MobiDBLite consensus disorder prediction 49 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04527 Trre-Chr13 52803942 52804541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre13g04527 Ovate 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04527 - - mtr:25499452 312.768