Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04525 ATGGTGAACAAAAAAACATTGAATCTCTCTTCTCTTCTCAAAAACACAGAACTCAAATATTCATCTTCATGGCCATGGCCTTATTGTCACCAACCAAAAACACTCTCTTTCAGAGCTGAAAACAACAATAACAAAGATGATACATTCAAAATCATCAACTCAGCTTATTTGGATACTTCTGAAGAATCCTTAACTGTTTCTCAAAATTCTGATTCAACTTTTTCAAAACCTTCTTTTGAGGAATCCAAACAAAATGATTCGGTCGAAACTGTGATTCGCGGGTTATCTTCTGATCGATTTTTCTTCGAGCCAGAGGAGACTAAATCTATTTTAGAAGCTAATAATAAAGCTGTAGTAGCAGGAAGTGAAACTACTCAAAGTTTGCCATTCAAAGATAGTGTTGTGTTATCTATGGAATCTCGAGATCCTTATGTCGATTTTCGAAAATCTATGGAGGAAATGGTAGAAACTCATGATGTTAAAGATTGGGAAAGTCTTCAAGAGCTTTTGTGTTGGTATTTGAAGGTCAATGAGAAAAACAATCATGGTTATATTGTTGGTGCTTTTGTTGATTTATTGGTTGCTCTTGCATTTGCTTCGTCTTCATCATCGTTTTCTTCTTCATCTTCTTCCTCTTCTCATTCTCCTTCTTCGCCTTTATCGTTTTATAGTTCTTCTTTGTCTTCGTCTTATAGCACTCGCTGTGTTTCTTGTATGGAAGCTCGCGGTGAAGAGGTTGATACTCCAAGTTCTTCTTTGTTGTTGGAACAAGTTAGGGAGGAAGAAGAGGTTGATACTCCGAGTTCTTCATTGTTGTTAGAACAAGTTAGGGAGGAGATTGATCACGAAAATGAAATTGAAGTTTCAGAGTCTGAAACTTCAATTTCATCTTCATCATCAAGTACTTAA 909 0.3597 MVNKKTLNLSSLLKNTELKYSSSWPWPYCHQPKTLSFRAENNNNKDDTFKIINSAYLDTSEESLTVSQNSDSTFSKPSFEESKQNDSVETVIRGLSSDRFFFEPEETKSILEANNKAVVAGSETTQSLPFKDSVVLSMESRDPYVDFRKSMEEMVETHDVKDWESLQELLCWYLKVNEKNNHGYIVGAFVDLLVALAFASSSSSFSSSSSSSSHSPSSPLSFYSSSLSSSYSTRCVSCMEARGEEVDTPSSSLLLEQVREEEEVDTPSSSLLLEQVREEIDHENEIEVSESETSISSSSSST 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04525 302 Pfam Transcriptional repressor, ovate 140 196 IPR006458 -
Trre13g04525 302 NCBIfam uncharacterized plant-specific domain TIGR01568 134 197 IPR006458 -
Trre13g04525 302 ProSiteProfiles OVATE domain profile. 136 195 IPR006458 -
Trre13g04525 302 MobiDBLite consensus disorder prediction 243 302 - -
Trre13g04525 302 MobiDBLite consensus disorder prediction 275 289 - -
Trre13g04525 302 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 48 196 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04525 Trre-Chr13 52780544 52781452 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre13g04525 Ovate 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04525 - - psat:127125591 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04525 13 52780544 52781452 Trre1g06063 1 64886967 64887713 ECH
Trre13g04525 13 52780544 52781452 Trre13g04525 13 52780544 52781452 ECH
Trre13g04525 13 52780544 52781452 Trre1g02325 1 18682994 18683662 PCT