Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04511 ATGTCATTACCAGAAACGGCGTCGTTATGGTGGAATAGTACTCAACAACAACAGAAAACGCAACTAGGAGAAGAAGGTGAAATAGAAGACGACGTCGTTTTAGAGTCAATAACAAAACAGAAAACAACAACAACAACAACAACACAAGAAGAAGAGAAAGAAGCGATGTTTGAGAAACCGTTAACACCAAGCGACGTAGGAAAATTGAACCGACTCGTTATACCAAAACAACACGCTGAAAGATATTTCCCACTCGACTCAGAAGAAGTAAAAGGTTTATTACTGAGTTTTGAAGACGAGTCAGGTAAATGTTGGAGATTCCGTTATTCTTATTGGAACAGTAGTCAGAGTTATGTTTTAACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCCGGCGACGTCGTTTTGTTTCAACGACACCGTACTCATCCGCAACGGTTTTTTATTTCATGGAGGCGCCGCCATGGTTATGTTTCTAGTACTCCGCCGGCTCATGTTAGCACTGGTATTGATGCCAATGGGGCTATTTCTGTTGGGTGGGCTAGAGGACTCTATCCTGCGCCGAATCCTTATCCTACACATCATCACCCCTTGTCTTACCATGCAGGTGGAGGGTCCGAAAGTCAGAACATAAGCACACCTTGTGGAAACAATTCGAGTTCGAGTACATCCAGGGTGCTAAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATATTAATATTAATGATTCCCAAACTAATTTGACACAACCAGATAATCAATGCTCTTATAATAATAATAATAACAATAATAATAATCCACAATTCTACCACCACCTCCATCATCAACCTCCTTCAAACCCTCACCATCACATGCTACGTCAACAACCATATTAA 894 0.4094 MSLPETASLWWNSTQQQQKTQLGEEGEIEDDVVLESITKQKTTTTTTTQEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEVKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTHPQRFFISWRRRHGYVSSTPPAHVSTGIDANGAISVGWARGLYPAPNPYPTHHHPLSYHAGGGSESQNISTPCGNNSSSSTSRVLRLFGVNMECQPDNININDSQTNLTQPDNQCSYNNNNNNNNNPQFYHHLHHQPPSNPHHHMLRQQPY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04511 297 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g04511 297 FunFam B3 domain-containing protein 50 167 - -
Trre13g04511 297 Pfam B3 DNA binding domain 57 158 IPR003340 GO:0003677
Trre13g04511 297 Gene3D - 44 165 IPR015300 -
Trre13g04511 297 SMART B3_2 57 159 IPR003340 GO:0003677
Trre13g04511 297 SUPERFAMILY DNA-binding pseudobarrel domain 54 158 IPR015300 -
Trre13g04511 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 263 IPR044800 GO:0003700
Trre13g04511 297 ProSiteProfiles B3 DNA-binding domain profile. 57 159 IPR003340 GO:0003677
Trre13g04511 297 MobiDBLite consensus disorder prediction 248 279 - -
Trre13g04511 297 MobiDBLite consensus disorder prediction 200 226 - -
Trre13g04511 297 CDD B3_DNA 56 146 IPR003340 GO:0003677
Trre13g04511 297 MobiDBLite consensus disorder prediction 207 226 - -
Trre13g04511 297 MobiDBLite consensus disorder prediction 1 62 - -
Trre13g04511 297 MobiDBLite consensus disorder prediction 248 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04511 Trre-Chr13 52622708 52624754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04511 50 258 RAV Transcription Factor Family AT5G06250 53.125 8.17e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g04511 B3 1.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04511 K09287 - gmx:100802734 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04511 13 52622708 52624754 Trre13g04511 13 52622708 52624754 ECH
Trre13g04511 13 52622708 52624754 Trre1g02336 1 18799017 18801443 PCT