Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04506 ATGGCCTCCATCACAAGAATAGTCGGTTACAATAATTCCGTATCTCCCTTTCTTCTCACTTTCCGCAGAGCTATTGCTTTCAAGCTTTTCGTTGGAGGACTCTCCTTTCACACTACAGAGAAATCATTGTCAGATGCATTCTCAAATTATGGACAAGTTATTGAAGCTAAAGTTATAACGGATAGGGTGTCAGAGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCACAAGATGAAGCTGAGTGTGCCATAACAGAGATGAATGAAAAGGCATTAAACGGACGTGTTATCTTCGTCGATTATGCAAAACCAGATACTAAACGCAGTATGGGAATGCCAATTGCCAGAGGACCTCCTGAAGATCTGAACAAACAACAGACAGTGGATTCTCCTCAAGACAAATGA 408 0.4044 MASITRIVGYNNSVSPFLLTFRRAIAFKLFVGGLSFHTTEKSLSDAFSNYGQVIEAKVITDRVSEKSKGYGFVTFASQDEAECAITEMNEKALNGRVIFVDYAKPDTKRSMGMPIARGPPEDLNKQQTVDSPQDK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04506 135 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Trre13g04506 135 SMART rrm1_1 28 101 IPR000504 GO:0003723
Trre13g04506 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 112 - -
Trre13g04506 135 Gene3D - 23 130 IPR012677 -
Trre13g04506 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Trre13g04506 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Trre13g04506 135 MobiDBLite consensus disorder prediction 110 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04506 Trre-Chr13 52586731 52587997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04506 29 119 Eukaryotic Initiation Factors Gene Family AT1G49760 35.922 5.13e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04506 - - lja:Lj1g3v4721740.1 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04506 13 52586731 52587997 Trre13g04506 13 52586731 52587997 ECH