Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04500 ATGGAAAATATGGCACCGGGTTATCGTTTCTACCCTACAGAAGAAGAGCTTATTTCGTTCTATCTTCACAAAATGCTTGAAGGAGAGAATCAATATTTGATTCGTACTGTTATACCGGTTGTTAATATATACGATTATAATCCATCACAACTTCCACAAATTTCAGGAGAGGCTAGTATGATTGACAAGGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGTGAGAGGAGGAAGACCAAGACGTCTCACAACAACCGGGTATTGGAAAGCCACCGGATCTCCTAATCATGTTTATTCGTCCGATAATCGCGTCATTGGCATGAAAAGAACTATGGTTTTCTATTGTGGAAGAGCTCCAAATGGAAAGAAAACAGATTGGAAAATGAATGAATATAAGGCCATTCAATTAGACCATGAAGCATTCTCTTCAAATAAACTAGAACCTAAGTTAAGACAAGAATTCAGTTTATGCCGAGTGTACAAGAAATCAAAATGCTTGAGAGCATTTGATAGAAGACCAGCACCAAGGAGGGTTACACCACTTGTTCAAAATGCTCAAGAGCACCAAAACGACTCAATATCCGAACATGATGTTCAAATGTTGATGAGGATAAGTGCAACAAGTTCACCAGAGAGTTCTTCCTCTATAGATCATCATGGCCAACCCTCACAAGAAGTAGGAGAGGCTAGCCAAATGGATATTAATGGTAACTATGAGCCTTTGTTGGATTGGGAGAGTGTGAATTGGTTCTTGGAATCAGAGATATAG 777 0.39 MENMAPGYRFYPTEEELISFYLHKMLEGENQYLIRTVIPVVNIYDYNPSQLPQISGEASMIDKEQWFFFIPRQESEVRGGRPRRLTTTGYWKATGSPNHVYSSDNRVIGMKRTMVFYCGRAPNGKKTDWKMNEYKAIQLDHEAFSSNKLEPKLRQEFSLCRVYKKSKCLRAFDRRPAPRRVTPLVQNAQEHQNDSISEHDVQMLMRISATSSPESSSSIDHHGQPSQEVGEASQMDINGNYEPLLDWESVNWFLESEI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04500 258 MobiDBLite consensus disorder prediction 208 231 - -
Trre13g04500 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 215 - -
Trre13g04500 258 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Trre13g04500 258 Gene3D NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Trre13g04500 258 SUPERFAMILY NAC domain 3 165 IPR036093 GO:0003677|GO:0006355
Trre13g04500 258 ProSiteProfiles NAC domain profile. 4 165 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04500 Trre-Chr13 52551819 52554234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04500 7 252 NAC Transcription Factor Family AT5G22380 46.964 5.17e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g04500 NAM 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04500 - - psat:127125619 408.297