Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04496 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAAACCATCACCCTCGAGGTTGAGAGTAGTGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAACTTGAAGATGGACGCACTTTGGCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTTCTTAGGCTTCGTGGTGGAATCATTGAACCTTCTTTGATGGCTTTGGCTCGCAAATACAACCAAGACAAAACCATTTGCCGCAAATGCTATGCTCGTCTTCATCCTAGGGCTGTGAACTGCCGCAAGAAGAAATGTGGACACAGCAATCAATTGAGGCCAAAGAAGAAGATCAAGTAG 387 0.4444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04496 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre13g04496 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trre13g04496 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre13g04496 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre13g04496 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre13g04496 128 Gene3D - 80 128 IPR038587 -
Trre13g04496 128 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Trre13g04496 128 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Trre13g04496 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Trre13g04496 128 PANTHER UBIQUITIN 1 90 - -
Trre13g04496 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre13g04496 128 CDD Ubl_ubiquitin 1 76 - -
Trre13g04496 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Trre13g04496 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre13g04496 128 Gene3D - 1 79 - -
Trre13g04496 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre13g04496 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04496 Trre-Chr13 52483138 52484037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04496 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.438 8.68e-92 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04496 K02927 - cave:132167306 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04496 13 52483138 52484037 Trre13g04496 13 52483138 52484037 ECH