Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04489 ATGTATTCTAAGATGCTAGGGAAAAATAATATATCCATCAAGAAACTTACGAAGAAGGTGAAGACTATAGGTAGAGTTGACCAAGATCCTGCTCATTGTGGTTTGTTGAAAGAATATGAGCAAGAAAAAAAAGACACAATTGCCAAAACTTTTGGGTCCAAAAAGAGTGGTGTTTTTGCATTATATGTTGGTGAGGAACGACAGAGATATGTGGTTTCAACTAGCTACCTTTCTCACCCCTTATTCAAGATGTTGTTGGAGAAAGCTTACAATGAATTTGGATTTGAACAAAGAAATGGTTTGGTAGTTCCATGTAGTGTTTCAGCATTTTTGGAAGTGGTTAATGCTATAGAATGTAACAATTGTAAGTTTGATATGGGAAATATTTTTTATGAGTTGATTTGA 405 0.3407 MYSKMLGKNNISIKKLTKKVKTIGRVDQDPAHCGLLKEYEQEKKDTIAKTFGSKKSGVFALYVGEERQRYVVSTSYLSHPLFKMLLEKAYNEFGFEQRNGLVVPCSVSAFLEVVNAIECNNCKFDMGNIFYELI 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04489 134 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 44 112 IPR003676 GO:0009733
Trre13g04489 134 Pfam Auxin responsive protein 52 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04489 Trre-Chr13 52423059 52427831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04489 57 120 Calmodulin-binding Proteins AT5G20810 51.562 5.57e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04489 K14488 - gmx:100776885 164.851