Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04483 ATGGATACATTAAGCCCTGCAGTCTTTGTCAATGCTGAACTGTTACCCTTTTATGTCGGAAGAAGAGTTCGTACTGTCATGCAAGTTTTGCGATCTGACAGTGTAGCTGTCATTGGAAAATCACCGGATGAGAAGCAGCTGATTGTAAAAGGATCACCCCCGCTCGCTCCTCTTACCAATTTTGTAGAAGTTATTGGTATTGTTAACAGTGACAAGTCCATCAAAGCCGAGTTATGGACCAACTTTGGTGATGCGATTGATATGTTCAGCTACAATAAGCTTTGTCAGCTCGCAAATGGAGATTTTAAAAACTTGTTCCTCTGA 324 0.4167 MDTLSPAVFVNAELLPFYVGRRVRTVMQVLRSDSVAVIGKSPDEKQLIVKGSPPLAPLTNFVEVIGIVNSDKSIKAELWTNFGDAIDMFSYNKLCQLANGDFKNLFL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04483 107 CDD RPA3 6 106 - -
Trre13g04483 107 Gene3D - 3 107 IPR012340 -
Trre13g04483 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Trre13g04483 107 Pfam Replication factor A protein 3 6 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre13g04483 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04483 Trre-Chr13 52388960 52389449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04483 1 107 Core DNA Replication Machinery Family AT4G18590 58.879 4.36e-45 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04483 K10740 - gmx:100306641 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04483 13 52388960 52389449 Trre13g04483 13 52388960 52389449 ECH
Trre13g04483 13 52388960 52389449 Trre1g03043 1 26189757 26193851 PCT