Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04482 ATGCACAAAATGCCCGGGACAAGACAGAGAGATGCAACAGCCGAAAATTCAGAGTCACCAGGGGGGACCAGCGAACCTGAAAAGCCCACAAATTCTGGTGAGCAGGTAGATCTTAATGTGGACAATGATCAAGAGGAGACCTCAGAGGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGATGAAGAAAAGAAGCCCTCAGATGGTGAAGATGAGATGAGAGTGGAAGATACTATAGATGAGGCTGAGAAAAAGAAGCATGCTGAGCTTCTTGCACTTCCTCCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCATGAAGTTTCTGAAAAAGATTTAAGGGTGTTTTGTCAATCTGTGGGAGAAGTAGCACAGGTCAGGATTATGAAGGGGAAAGAATCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATGGAGGAGCTGAACAATTCTGAATTTAAGGGGAAAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATAGGTTATTCATCGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGACCTGGAGTTATTTCTGTGGAACTATTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAGACTCAAAATTTAAACTCGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCATCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGCAGACATAACTCAGAATCGTCTGAGGGAGCTGTTTGAACATCATGGAAAGATCACTAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGTAGATATGGTTTTGTGCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAACATTGGAATGCTCACTCGCAAAGCCACAGGCAGATCAGAAGTCATCTGGTACTTCAAATTCGCACCAGTCAGCTGTACTTCCTTATCCATCTCCTCTTGGTTATGGTGCTCTTGGTGCAGGATATGGTGCTCTTGGTGCAGGATATGGTACTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGAATTGCATATGTTTTGCAACAGCCAGGTTTGCAGCAGCCAGGTTTGCAGCAGTCAGGTTTGCAGCAGTCAGGTTTGCAACAACATGCTCCATCACCGTTATCCAGACATGGTAGGAATAGTGGTGGTAGCTCAAGTGGTGAAAAGCGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCCTACTGA 1494 0.4424 MHKMPGTRQRDATAENSESPGGTSEPEKPTNSGEQVDLNVDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEEDEEKKPSDGEDEMRVEDTIDEAEKKKHAELLALPPHGSEVYIGGIPHEVSEKDLRVFCQSVGEVAQVRIMKGKESNGYAFVTFKTKELASKAMEELNNSEFKGKKIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSDSKFKLDNNAPTVSWADPRNSESSSSSQVKAVYVKNLPADITQNRLRELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNSHQSAVLPYPSPLGYGALGAGYGALGAGYGTAGFAPPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLQQPGLQQSGLQQSGLQQHAPSPLSRHGRNSGGSSSGEKRSNDNNRNRGHGRYNPY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04482 497 CDD RRM_SF 114 183 - -
Trre13g04482 497 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 484 - -
Trre13g04482 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Trre13g04482 497 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Trre13g04482 497 Coils Coil 40 79 - -
Trre13g04482 497 MobiDBLite consensus disorder prediction 444 497 - -
Trre13g04482 497 Gene3D - 190 270 IPR012677 -
Trre13g04482 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Trre13g04482 497 MobiDBLite consensus disorder prediction 10 38 - -
Trre13g04482 497 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 381 - -
Trre13g04482 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Trre13g04482 497 SMART rrm2_1 113 183 IPR003954 GO:0003676
Trre13g04482 497 SUPERFAMILY RNA-binding domain, RBD 278 376 IPR035979 GO:0003676
Trre13g04482 497 SUPERFAMILY RNA-binding domain, RBD 109 271 IPR035979 GO:0003676
Trre13g04482 497 MobiDBLite consensus disorder prediction 39 80 - -
Trre13g04482 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Trre13g04482 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Trre13g04482 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Trre13g04482 497 Gene3D - 34 189 IPR012677 -
Trre13g04482 497 Gene3D - 272 395 IPR012677 -
Trre13g04482 497 SMART rrm1_1 113 183 IPR000504 GO:0003723
Trre13g04482 497 SMART rrm1_1 190 267 IPR000504 GO:0003723
Trre13g04482 497 SMART rrm1_1 284 357 IPR000504 GO:0003723
Trre13g04482 497 MobiDBLite consensus disorder prediction 444 481 - -
Trre13g04482 497 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04482 Trre-Chr13 52380781 52384646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04482 114 427 Eukaryotic Initiation Factors Gene Family AT4G34110 23.823 3.20e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04482 K13161 - gmx:100798476 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04482 13 52380781 52384646 Trre13g04482 13 52380781 52384646 ECH