Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04468 ATGGAAAGGTTAGAGTTAAAAGAGGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCTGCCACCGGTCACGCCGGTATTCCTCTCGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTTCGAATCTGGGAACAAAATCTCTCCACTAATCTTTTCTCCTGCAAGGCGACTTTGGAAGAAACGCACACTCGAACTGTTCGGTCTTGTGCTTGGTCACCGTCTGGGAAATTGTTGGCAACTGGAAGCTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAATGAAGTAAAGAGTGTATCTTGGAATGCAGCTGGAACTTTGCTTGCAACTTGTAGTAGGGACAAGTCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACGGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTTTGGGCAGATGAAGGTGACAGTGATGACTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAACGGTCATACATCTACTGTTTGGGCCCTCTCCTTCAATGCCAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTAAAGGTATGGGGAACAGAAAGCATAGGTATGCAATCTGGTGGTGGATTTGCTCCGTGGAGACATCTTTGCACTCTAACAGGGTATCATGAGCGGACAATTTTCTCAATTCATTGGTCAAGAGGAGGTATCTTTGCCAGTGGAGCTGCTGATGACGCTATTCGGCTTTTTGTGGATGATAACAGTGAAAGTCAGGTTGATGGTCCTCAGTACAAGTTGCTATTGAAGAAGGATAAAGCTCATGACATGGATATAAATTCTGTGCAGTGGAGTCCTGGGGAGAAGCCGCTGCTAGCCTCTGCAAGCGATGATGGAACAATCAAGGTGTGGGATCTGGTATCATAG 1038 0.4615 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSTNLFSCKATLEETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNAAGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWGTESIGMQSGGGFAPWRHLCTLTGYHERTIFSIHWSRGGIFASGAADDAIRLFVDDNSESQVDGPQYKLLLKKDKAHDMDINSVQWSPGEKPLLASASDDGTIKVWDLVS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Trre13g04468 345 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Trre13g04468 345 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Trre13g04468 345 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 345 IPR001680 GO:0005515
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Trre13g04468 345 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 60 96 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 310 342 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Trre13g04468 345 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Trre13g04468 345 PANTHER WD40 PROTEIN CIAO1 6 343 IPR028608 GO:0016226|GO:0097361
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 102 141 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 57 97 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 5 50 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 193 236 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 147 186 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 302 342 IPR001680 GO:0005515
Trre13g04468 345 SMART WD40_4 250 289 IPR001680 GO:0005515
Trre13g04468 345 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 345 IPR028608 GO:0016226|GO:0097361
Trre13g04468 345 CDD WD40 8 342 - -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Trre13g04468 345 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 345 - -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 235 - -
Trre13g04468 345 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 4 345 - -
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Trre13g04468 345 Gene3D - 35 345 IPR015943 GO:0005515
Trre13g04468 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 235 IPR001680 GO:0005515
Trre13g04468 345 SUPERFAMILY WD40 repeat-like 4 342 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04468 Trre-Chr13 52262551 52268432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04468 80 345 U-box Gene Family AT2G33340 26.966 1.91e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04468 K24730 - gmx:100778826 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04468 13 52262551 52268432 Trre13g04468 13 52262551 52268432 ECH