Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04462 ATGGTTGTAAGGGACGGTGAGATGAATTGGCAAGGGGAGGTAGAATCGTTGCAGAGGGAAGAAGAAGCGATCAAGAATGACGTCAACAATGGCATCCCATCGTCACTTGGAAGACAATCATCCTCGATATACTCACTCACTCTCGATGAGTTCCAGCACTCTCTTTGTGAGAGCGGTAAGAATTTTGGGTCGATGAACATGGATGAGTTCCTCAGTAGTATTTGGAATGCAGAAGAAAATCAACAAGCTGCTTCCAACAATAATAATAACAACAACAGCAACAATAATAACTTGGCTGTAAATCAGAAAGGGATTGGCACACAGGCTAGTCTTCCTCGACAAAATTCGCTGTCGATTCCAGCACCTCTTTGTAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACACCATCACAATAATAACAATGTTGCCCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGAGAGATGACATTGGAGGATTTCTTGGTTAAAGCTGGGGTAGTTAGGGAACAACAGTCTGCTATGCCGGTTGCAATAGCACCACCTCCAGCTGCAGCAGCAGCAGCAGCAGCATCTCACCGGCCACAGCAGCATCATGCGGCAGTGTATCCAAATAACAACTCCACAATGGCTCAGGCTGCTCCTTTTGCTATTGGCGGTGGCGCTGGGAATGTGGTTGCGCCACCTTACCAAGCGGTGGCTCAAGGAGGTGGGGCAGTTGGAGAGCCTTCGGGATATGCTGGAAATGGTAAGAGGGATGGTATAGGTACGGGGTATCCAGCCCCGCCGGGGGTTTGTTATGGAGGAAGAATGGTGAATGGAGGAGCTGGCGGTTATGGCGTCCCAGTGCCACAAACTATGGGAATGGGCGGACCGGTTAGTCCTGTTTCATCCGATGGCATTGGTAACGACAAATCGGGTGGACCATTTGGGCTTGACATGAGTGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTAGTTGAGAGAAGGCAAAGAAGAATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAACCAATTAAGAGAAGAGAATTCTCAACTGAAACAAGCACTGGCTGAACTCGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAATGTGAGAGTTCAAAGTAAAGCTCAGAAGGCAAAAGAGAAACTAAGAGGCTTAAGAAGGAACACAAGTTGTCATCTTTGA 1281 0.4676 MVVRDGEMNWQGEVESLQREEEAIKNDVNNGIPSSLGRQSSSIYSLTLDEFQHSLCESGKNFGSMNMDEFLSSIWNAEENQQAASNNNNNNNSNNNNLAVNQKGIGTQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQHHHNNNNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSAMPVAIAPPPAAAAAAAASHRPQQHHAAVYPNNNSTMAQAAPFAIGGGAGNVVAPPYQAVAQGGGAVGEPSGYAGNGKRDGIGTGYPAPPGVCYGGRMVNGGAGGYGVPVPQTMGMGGPVSPVSSDGIGNDKSGGPFGLDMSGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQSKAQKAKEKLRGLRRNTSCHL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04462 426 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 37 405 IPR043452 GO:0003700|GO:0045893
Trre13g04462 426 MobiDBLite consensus disorder prediction 81 100 - -
Trre13g04462 426 Pfam bZIP transcription factor 341 391 IPR004827 GO:0003700|GO:0006355
Trre13g04462 426 Coils Coil 357 421 - -
Trre13g04462 426 Gene3D - 339 395 - -
Trre13g04462 426 MobiDBLite consensus disorder prediction 406 426 - -
Trre13g04462 426 SUPERFAMILY Leucine zipper domain 341 391 IPR046347 GO:0003700|GO:0006355
Trre13g04462 426 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 339 395 - -
Trre13g04462 426 SMART brlzneu 336 401 IPR004827 GO:0003700|GO:0006355
Trre13g04462 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 391 IPR004827 GO:0003700|GO:0006355
Trre13g04462 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700|GO:0006355
Trre13g04462 426 CDD bZIP_plant_BZIP46 346 395 - -
Trre13g04462 426 MobiDBLite consensus disorder prediction 406 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04462 Trre-Chr13 52231808 52233393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04462 1 396 bZIP Transcription Factor Family AT2G36270 49.663 1.75e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g04462 bZIP_1 6.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04462 K14432 - gmx:100790948 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04462 13 52231808 52233393 Trre13g04462 13 52231808 52233393 ECH