Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04453 ATGGCGGAAGAGCACCGATGTGAAACACCAGAAGGTCACAGACTCTGCGCTAACAACTGCGGCTTCTTCGGTAGTTCAGCTACGATGAATCTCTGTTCAAAATGTTACAGAGATATTCATTTGAAGGAACAAGAACAAGCCAAAACCAAATCAACGATCGAAACTGCTCTTTCCTCAGCCTCCGCTTCAACTACCGTGGTTGTTGCTTCTCCGGTTCCGGAAATCGAATCTCTGCCTCAACAACCGGCGTTGACTGTTCCGTCAATCGTGCCTGACGAATCGGATTCCTCGATCGGATCGGTTCAACCGAACCGGTGTGGAACGTGTAGGAAGCGGGTCGGGTTAACCGGATTCAAGTGTAGATGTGGAATCACGTTTTGTGGGACCCACAGGTATCCGGAGAAACACGAGTGCGGTTACGATTTCAAAGCCGTGGGGAGAGACGAGATAGCGAAAGCGAATCCCGTGATCAAAGCTGATAAGCTGAGAAGAATTTGA 498 0.494 MAEEHRCETPEGHRLCANNCGFFGSSATMNLCSKCYRDIHLKEQEQAKTKSTIETALSSASASTTVVVASPVPEIESLPQQPALTVPSIVPDESDSSIGSVQPNRCGTCRKRVGLTGFKCRCGITFCGTHRYPEKHECGYDFKAVGRDEIAKANPVIKADKLRRI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04453 165 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Trre13g04453 165 Gene3D - 1 63 - -
Trre13g04453 165 Gene3D - 85 161 IPR035896 -
Trre13g04453 165 FunFam Zinc finger AN1-type containing 6 83 161 - -
Trre13g04453 165 Pfam AN1-like Zinc finger 106 142 IPR000058 GO:0008270
Trre13g04453 165 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Trre13g04453 165 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Trre13g04453 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Trre13g04453 165 SUPERFAMILY AN1-like Zinc finger 93 160 IPR035896 -
Trre13g04453 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Trre13g04453 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 63 - -
Trre13g04453 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04453 Trre-Chr13 52125798 52126295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04453 1 165 C2H2 Transcription Factor Family AT3G52800 51.705 2.59e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04453 - - gmx:100789686 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04453 13 52125798 52126295 Trre13g04453 13 52125798 52126295 ECH
Trre13g04453 13 52125798 52126295 Trre1g02412 1 19373801 19374325 PCT