Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04448 ATGGATTTGGATCATGTAATTGCTGGGAAGTTTAATCTGGGAAGGAAAATCGGAAGAGGGTCTTCTGCAGAGATTTATATAGCTGTTAATGAACAAACTCAGGAGGTGGTTGCTGTCACGCTGGAACCTGTGAACACCAACCGTCCACGACTTCTCTATGAATCACAATTGTATTTGCTTCTTCAAAGAGGAAAGGGGGTGCCTCACCTAAAGTGGTTTGGAGTTGAGGGAAACTACAAAGTCATGGCAATTGACCTTCTTGGACCTAGTTTGGAAGATCTGTTCAATTATTGCAACAGGAAGTTTACATTGAAGACGGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATTTATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAACCAGACAATTTTTTAATGGGCCTAGGACGTAAAAATGAAAAACAGTTGTCAAAAGCTTTCTTTCTTGCGCACAGGGAAAACAAGAACCTTACAGGGACAGCTCGATATGCGAGTTTAAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTTCTTATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCGGACACGAAACAACAAAAATATGATAATATCGCCAAGAAGAAGATGAAAACTTCCATAGAGGTTCTCTGCGGATCATATCCTCCGGAGTTTGCATTATACTTTCACTACTGCCGATCATTGCAGTTTGAAGACAAGCCCGACTATTCACGTTTGAAAAGGCTTTTTAAAGCTCTATTTATTCGAGAAGGTTATGAATTTGACCATGTTTTTGACTGGACTTTATTGAGGCGTGACAGTTGCAAGGCGGCTATGAATGCAGGGCAATCTGGCCGGCTGACCTCATCTCCTCCATCTACCTAA 921 0.4126 MDLDHVIAGKFNLGRKIGRGSSAEIYIAVNEQTQEVVAVTLEPVNTNRPRLLYESQLYLLLQRGKGVPHLKWFGVEGNYKVMAIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEFMHSRGFLHRDIKPDNFLMGLGRKNEKQLSKAFFLAHRENKNLTGTARYASLNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKADTKQQKYDNIAKKKMKTSIEVLCGSYPPEFALYFHYCRSLQFEDKPDYSRLKRLFKALFIREGYEFDHVFDWTLLRRDSCKAAMNAGQSGRLTSSPPST 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04448 306 PANTHER CASEIN KINASE-RELATED 15 283 - -
Trre13g04448 306 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04448 306 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Trre13g04448 306 FunFam Uncharacterized protein 2 300 - -
Trre13g04448 306 Pfam Protein kinase domain 12 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04448 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Trre13g04448 306 SMART serkin_6 11 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04448 306 SUPERFAMILY Protein kinase-like (PK-like) 6 279 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04448 Trre-Chr13 52083933 52086885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04448 13 258 MAP Kinase Kinase Kinase AT1G62400 25.869 3.71e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre13g04448 Pkinase 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04448 K08960 K08959 cam:101493293 464.151