Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04445 ATGGAATCAAACAAACGCTATGATTCAACATCTTCTTCTCTTTCCTTATCTCCTACTTCATCATCTGCTTCCTCCTCTTCGTGTGCGTCGGAGGATCGTTCGGTTAAGACGGAGGAGATTGAGGCGGCGGAGACTTTAGCTTACTTGGCGCGACTAGCAATGCGTCAAACGAATCACTCCGCCGATAAACGAGATACCTGCCGATTCACAAGCGACGGTTCACCGATTCCTTACTCGGAAACTCCTCTGCATGTGGGCCAAGCTGTTGCAGAGCAGCTAGATGAAAAGATATCCAATACTACATCCGTAAAAACAGAAAGGACTCGGGAGAATGACTGCTTAAGATACATGAAGGTGGAGCAGGATGCTGATTTACCTAAGACTACTCACTGTAATAAGTCAAGACGTAATTTAACCGAGGAAGAAAAAGAAGCACGGAGGATACGAAGGGTATTGGCAAATAGAGAGTCCGCTAGGCAGACAATTCGCCGCAGGCAGGCTCTGACTGAGGAGTTAAACAGAAAAGCTGCGACCTTAGAGATGGAAAATGAAAACCTGAAGAGGAAGAAGGAGTTGGCTTTGAAAGAGTATCAGTCTTTAGAGACTACAAATAAGCTCTTAAAATCACAAGTAACTAAGTCAATAAACACAAAAGTGGAAAAATCTCCCGTTGAGCAGGAGTTATCTGTGGCTGAGGCAGCACCTATGCCTGGTAATAGTCCATGGTTTCTTTATAACCATTTTCCGGTTAGACAGTTATTTTGGCCCGCCATTTTTCAATCTTCTAAACAAGTTCAATTACAACATACACCATTTAATTCCATTGCCATTCCATCACATGTATATGTACCATGTCCTTCTGAGTCTGAATCTCCTCACAAGCAAAATAGCTTTGTAAATGACAATCAAACACAAAATCCATTGTACATGTTTCCATGTCCTTGGTTATACCCTCCTCCAGGAGTTGGAAATGGAGAACCACCACCTTCCAGTAGCCTAGAAGATAAACAAGATAATCTTCCTCCTGGTGAACAATGTAGTACTAGTTTATCCTTAAATAGTGTGGGAAATGGGGATTATCATGCAACTCTACCTATCAAACTGAAAACAGAAGCTTCTGACTGGACAGAATCCAGATCTAGTAATGACCCTGACCATGCCACTCCAAGTTTTTCTTTGGATGGAGGTGAGCAGAAAGCAAGATGTCCTGTAGAAATGTTCCATGGACCTGCAGTTGATTGTAATGGACATGCTTATGTAGTCAAGCAAGAACCTGAGCTTCAATTACATTCCGCTTCCGATACTAACGTATCTTCAACAGCTTCTCATATCAAACCTTATTCACTAGAAAAGAAACAAGAACAATTCATATGCCCAGGTAAAAATCTAGTGGATGCAGTTGCTGCAGCAGAGGCACGAAAGAGGAGAAAGGAGCTGACAAAACTAAAAAGCAACCAAAGCCGCCAGTTCCGGATGGATTGTTGA 1485 0.4256 MESNKRYDSTSSSLSLSPTSSSASSSSCASEDRSVKTEEIEAAETLAYLARLAMRQTNHSADKRDTCRFTSDGSPIPYSETPLHVGQAVAEQLDEKISNTTSVKTERTRENDCLRYMKVEQDADLPKTTHCNKSRRNLTEEEKEARRIRRVLANRESARQTIRRRQALTEELNRKAATLEMENENLKRKKELALKEYQSLETTNKLLKSQVTKSINTKVEKSPVEQELSVAEAAPMPGNSPWFLYNHFPVRQLFWPAIFQSSKQVQLQHTPFNSIAIPSHVYVPCPSESESPHKQNSFVNDNQTQNPLYMFPCPWLYPPPGVGNGEPPPSSSLEDKQDNLPPGEQCSTSLSLNSVGNGDYHATLPIKLKTEASDWTESRSSNDPDHATPSFSLDGGEQKARCPVEMFHGPAVDCNGHAYVVKQEPELQLHSASDTNVSSTASHIKPYSLEKKQEQFICPGKNLVDAVAAAEARKRRKELTKLKSNQSRQFRMDC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04445 494 SMART brlzneu 142 206 IPR004827 GO:0003700|GO:0006355
Trre13g04445 494 MobiDBLite consensus disorder prediction 1 37 - -
Trre13g04445 494 SUPERFAMILY Leucine zipper domain 146 201 IPR046347 GO:0003700|GO:0006355
Trre13g04445 494 MobiDBLite consensus disorder prediction 320 354 - -
Trre13g04445 494 CDD bZIP_plant_GBF1 147 198 IPR045314 GO:0003700|GO:0006355
Trre13g04445 494 PANTHER G-BOX-BINDING FACTOR 3-RELATED 12 260 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre13g04445 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 207 IPR004827 GO:0003700|GO:0006355
Trre13g04445 494 MobiDBLite consensus disorder prediction 373 397 - -
Trre13g04445 494 Coils Coil 492 494 - -
Trre13g04445 494 Coils Coil 469 489 - -
Trre13g04445 494 Coils Coil 131 151 - -
Trre13g04445 494 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g04445 494 MobiDBLite consensus disorder prediction 330 354 - -
Trre13g04445 494 Coils Coil 165 210 - -
Trre13g04445 494 Pfam bZIP transcription factor 142 204 IPR004827 GO:0003700|GO:0006355
Trre13g04445 494 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04445 Trre-Chr13 52057610 52063227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04445 127 492 bZIP Transcription Factor Family AT1G19490 34.392 7.91e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g04445 bZIP_1 5.5e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04445 - - gmx:100788624 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04445 13 52057610 52063227 Trre13g04445 13 52057610 52063227 ECH