Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04443 ATGGGTTCATTTTCTGGCACTTGTGAAATAGTTGAAGCAAGAGAGGATTTAAGTAGAGGGAAAGGTGTTGTAGGGATTTGCCAGTCCAATTCTCGGTGCAAAATGTCTGAGAAAAATAAAAAGCCTTTGGTGTTGAACATGGGATACAAGGATTATATTGATGATGATATTAACAAGCTGTTTGAATCATTTGCTCTTAAATCTTCATCAAGGGATTTGGGCATTTCACAAGATGGTACGAGTCATAAGCTGAAAAACACCTTAAAAAAGCCAATGACAATGGGTGTTCCTCGGTCCCCACGAGTTGGAACTTCTGAGTCTGCTAATTTGAAGCAAGCATTGAGAGACCTTTGTATATCTAAGGCATCAGAAGTGGCTGCTATGAAACGGTTGTCAAAGTCAACAGCTTCTCCGAGAATATCTGAGGCTGGGAAAATACAGACATTGTACAGTTCAGTTGTAAATGAAACTGGTCATTCTGGGCCTTATGTTGCTGAGAGTAAAGAGCACAGAAAAGAAATCTCTCTAGTGCCAGAAAAAGGCAAGTTACCCTCCTTGGATAAAACATCTCAATCTCATCAAACTACGCAAATCACATCATCGAGCCAAGCCATCAATTCTGCTTGGGAAACCGCTGTTGCAACTACTCAATTTGATTCTGGGACTTCATCGATCCAAAGTGATTCTGCATGTTCATCTAGTAAAATTGGGTTTCAATCACGGCCTGTGGTACCTGTTGAACCAGAAAAACAAACATCTGCATCTTATCAATCTCTTTATAATGCATCTGAAAGTAAATTAGAGTTGCCAGTACATGCTTCTTCCCCTAAAAAGTTAGGAAATAAAGTGGTTGTGTCAAATACTGGACGGAAAGGTAGGTTGCAGACAGCATCTTCTTCATCTACTTCTGGAAGCGGCACCAGAGTTAACAAACAGCCACACCATGCCCCTCACACAGTTAAAATGGTCATCAAGAACAAGAGTCTGAGTAAGAAGAAAGTGAAGGAGGATTCAGGTTCTGCATCATGTGATCCTACATCAAATGAAGTTAGTAAGTCTGTTCCTGGCACAGCTCGACTGATTTGTGAAAGATGTAGGCGTGCTTTAGAAAATACAGGGGAAAAAAAAAGCAAAGAGATTATGATCGCAGACTCTACTAGTCCTGGAAATGGAGTGAACTCGACTAATGCACACTCTGGTTCAAATAAGCCTGATTTGGCATCAACTAGCGGTAATATAAACAAAGGTTGCAAAGCAGTTGCAAAGGTGGTGAAGAACAACACCAAGTTGAAAGAGCAACTTGAGTTTTCACAAAGCTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACTAGTACCAGTGATGAGAGCAACTTGAGTGGCTCAAGTTTTGGCAGTAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGCATGGAACCTTGGGCTTGAGACATTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTTTATCTCGCTGAACTAATTGGCACAAGCTGTTTGTTTGCTATTAAGGTCATGGACATCGAATTTTTGGCACGGCGGAAGAAGATACCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGACCATCCGTTTCTTCCTACATTGTATGTGCAATTTACATCAGATAATCTCTCATGTTTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGATAGATGTTTTTCGGAGCTAGCAGCAAGGTTTTATGTTGCTGAAGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTATCGTGATTTGAAACCTGAAAACATTCTTGTTCGAGAGGACGGCCACATTATGCTCACCGATTTTGATTTGTCATTGAGGTGTGCTGTTAGCCCAACACTTCTGAAGTCATCTTATGATGTTGACTCTACAAAAATTTCTCGTCTTAGTGCACAATCAAGTTGTATTGAACCATTCTGCATTGAACCATCTTGTCAAGTTACATGCTTCAGCCCCAGCTTCCTACCTTCTGCAGCAAAAGCAAGGAAATTAAAAGTTGATCCTGTTGCCCAGATCAGATCACTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGTACACACGAATACTTGGCGCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGCGTTTTTCTTTATGAGCTTTTATATGGTAGAACACCCTTTAAAGGTTCTAACAATGAAGAAACATTAGCAAACGTGGTATTGCAAAGTCTTAGATTCCCTGATGACCCATTTGTTAGTTTCGAAGCGATGGACCTGATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTTCACAGAGAGGAGCTGCTGAGATTAAAAAACATCCCTTCTTCGAGGGTCTTAACTGGGCCTTAATTCGTTGTGCTACCCCACCAGAACTTCCAGAATTTTGTGATTTTGAAGTTTTAGACATGGCCTCACAAGGCAAGGGTGCTAAGTATTTAGAGTGTAATGTAGGAGAGCACGTCGAATTCGAGTTGTTTTAA 2631 0.4166 MGSFSGTCEIVEAREDLSRGKGVVGICQSNSRCKMSEKNKKPLVLNMGYKDYIDDDINKLFESFALKSSSRDLGISQDGTSHKLKNTLKKPMTMGVPRSPRVGTSESANLKQALRDLCISKASEVAAMKRLSKSTASPRISEAGKIQTLYSSVVNETGHSGPYVAESKEHRKEISLVPEKGKLPSLDKTSQSHQTTQITSSSQAINSAWETAVATTQFDSGTSSIQSDSACSSSKIGFQSRPVVPVEPEKQTSASYQSLYNASESKLELPVHASSPKKLGNKVVVSNTGRKGRLQTASSSSTSGSGTRVNKQPHHAPHTVKMVIKNKSLSKKKVKEDSGSASCDPTSNEVSKSVPGTARLICERCRRALENTGEKKSKEIMIADSTSPGNGVNSTNAHSGSNKPDLASTSGNINKGCKAVAKVVKNNTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNLSGSSFGSRPHMSKDVRWEAIRHAQMQHGTLGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDIEFLARRKKIPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLDRCFSELAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSYDVDSTKISRLSAQSSCIEPFCIEPSCQVTCFSPSFLPSAAKARKLKVDPVAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLRFPDDPFVSFEAMDLIRGLLVKEPENRLGSQRGAAEIKKHPFFEGLNWALIRCATPPELPEFCDFEVLDMASQGKGAKYLECNVGEHVEFELF 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04443 876 MobiDBLite consensus disorder prediction 185 203 - -
Trre13g04443 876 ProSiteProfiles Protein kinase domain profile. 494 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04443 876 PANTHER FLIPPASE KINASE 1-RELATED 258 847 - -
Trre13g04443 876 Gene3D Phosphorylase Kinase; domain 1 493 577 - -
Trre13g04443 876 Gene3D Transferase(Phosphotransferase) domain 1 719 844 - -
Trre13g04443 876 Gene3D Transferase(Phosphotransferase) domain 1 578 643 - -
Trre13g04443 876 Pfam Protein kinase domain 723 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04443 876 Pfam Protein kinase domain 495 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04443 876 FunFam serine/threonine-protein kinase D6PK-like 721 844 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 271 353 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 181 203 - -
Trre13g04443 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Trre13g04443 876 MobiDBLite consensus disorder prediction 372 412 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 383 412 - -
Trre13g04443 876 FunFam Serine/threonine-protein kinase D6PK-like 492 577 - -
Trre13g04443 876 SMART serkin_6 494 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04443 876 SUPERFAMILY Protein kinase-like (PK-like) 469 844 IPR011009 -
Trre13g04443 876 MobiDBLite consensus disorder prediction 434 469 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 288 312 - -
Trre13g04443 876 CDD STKc_phototropin_like 492 844 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 434 467 - -
Trre13g04443 876 MobiDBLite consensus disorder prediction 314 328 - -
Trre13g04443 876 FunFam serine/threonine-protein kinase D6PK-like 578 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04443 Trre-Chr13 52043464 52046995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04443 1 876 AGC Kinase Gene Family AT3G52890 50.565 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre13g04443 Pkinase 5.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04443 - K08286 mtr:11427174 1382.47