Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04437 ATGCCAAAACTTGTTCTTCACCACCACCCTGCAGAATCCCATCAACAACAACAATCTTCTGTTCCTTCTGCACTTCCTTTCTTTGTTCCTCCTCAATCCAACAACACCAAACTCACCAACTTGTCAGATTCAATTACATTACCACATTCCAATATCACCAACAACAGATCATTTCCAAGAATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAGGCTTTAATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATCAAAAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATAACCCTCTTCAACATTATCAATCTACATCTTTGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGTCGTTGCCGGAGAACTGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAGAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCCGTGGAACTTCCCACACCAACTAGTAGTGCCGGTAATGGTGGTGGTAATAGCGGTGGTGGTGGTGGTGGTGGAACTTTCTCTGCTTCACAATCTTTTGCTACTGCCTCATTGAAATCTCCTTTTAATCTTCACCTCAATGAACGTTCCTATGGGACCAAGAATGAAGACAAAAGCAGCTTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGAAAATGCTAAGACATTTTTTTGACGATTGGCCAAGATCACTACAACAAAAGTCTGACAATGCTGAAAACAACAACAATGGTGGTGGGTCATCCTCCACATGTCTCTCAATTTCAATGCCAGGAGGAAATAGCAGTAACACTTCTTCTTCAGATATATCATTGAAACTGTCCACTGGCTATGGAGAAGAACCATGCCCAACAAATGTTAATGTGGGCCTACAAACTGAGCAACAACAACAACTTCAAGTGAATTGGGTCGGTGGATGGAATTCAGGTAATCAAGTGTCTTCAATGGGAGGACCACTTGCTGAAGCACTTAGATCATCCACCACAACTTCTTCACCTACTAGTGTTTTACATCAATTGCCACGTTCTTCTGCTTCTCAGACCACCTACATTAGTGCCTAA 1155 0.426 MPKLVLHHHPAESHQQQQSSVPSALPFFVPPQSNNTKLTNLSDSITLPHSNITNNRSFPRIGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHNPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPTSSAGNGGGNSGGGGGGGTFSASQSFATASLKSPFNLHLNERSYGTKNEDKSSLFESEDHVGGDGRSGGKMLRHFFDDWPRSLQQKSDNAENNNNGGGSSSTCLSISMPGGNSSNTSSSDISLKLSTGYGEEPCPTNVNVGLQTEQQQQLQVNWVGGWNSGNQVSSMGGPLAEALRSSTTTSSPTSVLHQLPRSSASQTTYISA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04437 384 ProSiteProfiles QLQ domain profile. 64 99 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04437 384 PANTHER GROWTH-REGULATING FACTOR 5 34 295 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre13g04437 384 MobiDBLite consensus disorder prediction 11 26 - -
Trre13g04437 384 Pfam WRC 134 176 IPR014977 -
Trre13g04437 384 SMART QLQ_2 63 99 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04437 384 MobiDBLite consensus disorder prediction 160 201 - -
Trre13g04437 384 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g04437 384 MobiDBLite consensus disorder prediction 226 261 - -
Trre13g04437 384 ProSiteProfiles WRC domain profile. 133 177 IPR014977 -
Trre13g04437 384 MobiDBLite consensus disorder prediction 226 310 - -
Trre13g04437 384 MobiDBLite consensus disorder prediction 341 384 - -
Trre13g04437 384 MobiDBLite consensus disorder prediction 175 189 - -
Trre13g04437 384 Pfam QLQ 64 97 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04437 384 MobiDBLite consensus disorder prediction 262 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04437 Trre-Chr13 51925314 51928745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04437 58 371 GRF Transcription Factor Family AT3G52910 52.025 4.62e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre13g04437 WRC 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04437 - - aip:107648821 476.092