Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04436 ATGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAGGAACAACATTCCACAAAGATGCCAAAACTTGTTCTTCACCACCACCCTGCAGAATCCCATCAACAACAACAATCTTCTGTTCCTTCTGCACTTCCTTTCTTTGTTCCTCCTCAATCCAACAACACCAAACTCACCAACTTGTCAGATTCAATTACATTACCACATTCCAATATCACCAACAACAGATCATTTCCAAGAATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAGGCTTTAATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATCAAAAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATAACCCTCTTCAACATTATCAATCTACATCTTTGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGTCGTTGCCGGAGAACTGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAGAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCCGTGGAACTTCCCACACCAACTAGTAGTGCCGGTAATGGTGGTGGTAATAGCGGTGGTGGTGGTGGTGGTGGAACTTTCTCTGCTTCACAATCTTTTGCTACTGCCTCATTGAAATCTCCTTTTAATCTTCACCTCAATGAACGGTAA 735 0.4245 MDFHLKQWRNQHESEEEQHSTKMPKLVLHHHPAESHQQQQSSVPSALPFFVPPQSNNTKLTNLSDSITLPHSNITNNRSFPRIGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHNPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPTSSAGNGGGNSGGGGGGGTFSASQSFATASLKSPFNLHLNER 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04436 244 ProSiteProfiles WRC domain profile. 155 199 IPR014977 -
Trre13g04436 244 Pfam QLQ 86 119 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04436 244 PANTHER GROWTH-REGULATING FACTOR 5 41 204 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre13g04436 244 SMART QLQ_2 85 121 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04436 244 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g04436 244 MobiDBLite consensus disorder prediction 197 211 - -
Trre13g04436 244 ProSiteProfiles QLQ domain profile. 86 121 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g04436 244 MobiDBLite consensus disorder prediction 182 227 - -
Trre13g04436 244 Pfam WRC 156 198 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04436 Trre-Chr13 51925248 51926240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04436 1 205 GRF Transcription Factor Family AT2G36400 54.128 1.71e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre13g04436 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04436 - - gmx:100816436 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04436 13 51925248 51926240 Trre13g04436 13 51925248 51926240 ECH