Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04430 ATGGCTCAAAAGTACTTACATGAGCTACTAAAGGAAGATCAAGAACCATTTTTTCTCAACAACTACATTTCAGATAAACGTAACCAAATGAAAATTACTACTACTTTACAACTCAACAAAAAACCAATAAACTCAAAATTCAACATAAATCTATGTAATAAAAACACTTCTTGTTTTTTCTCATTTCCTCAAACACCAGATTTCAAAAAATCACCACTTTTTGAACTAACTTCACCTGTTAAAAGTCCTTGCAAAATCCCTTCTAGAACTGCAACTCTTCTTCTTGAAGCTGCTCTTAGGATCCAGAAACATTCATCATCATCTTCTTCAAATTACAAAACTAAAAACAAAGGTTTTGGACTATTTGGTTCTTTATTCAAGAAACTCAAGCAAAGAAACCACAACCATAAGCTTGAAATAGAGACTGAAAATGTGTCTGTCAAAGATTTATTCAAGTGGGATTCTTCTGTGAAACGTAGAGAAAAAGTGGTTTCTCAGAAAGAAAATGAAGATAAATCATTGGAAATGGAAATGGAAACTTCTTGTAGTGGTTACTCTGAAGGGATTATTCAAGAAGCTTGTGCTTGTTATAACCGTGCTTTTTCCGAAAGTCCTTTTCGTTTTGTTCTTCAAACTAGTCCTTGCTCCGGTAGCCACACGCCGGAGTTAGCCTCGCCGAGTCGCCACATAACAGAGGACAAAGAAAGCAATGAAGGTGAGATTCTCAATCAATTCAAGTCAGGGGAAGAAGAGGAAGAAGATAAGGAACAGTGTAGTCCAGTCTGTGTTTTAGATCCACCATTCAATGATGACGACGAAGGACATATAAACGACGAAGATGAAGATGATGATGGTGGTGATTTTGATTTGGAGAGCAGTTATGCCATTGTACAGAGAGCAAGACAGCAGATATTGTACAAGCTTAGCAGATTTGAGAAACTGGCGGAGTTGGATCCATTAGAACTCGAGAAAAGAATGATCGAAGAAGAAGAGGATGAGGATGAAACATATATGGAAGAGGATGAGGAAATGGATGATGTATCATGTGAACAAAATGATTTCAAACATTTGGTTTTTGAAGCTGTCTATCTGTCAATGGTCCAAGACAGACAAAAAATTCCACAAGAGTTTAAGAAACTAATTTCTGATCTTATTTTGGAAGAAGAGAGAGAATTTAATTCTTTAGAAGAGAGAGACATAGTGGTAACTAAGATATGCAAGAGGCTAGAATCATGGAAAGAAGTGGAATCAAACACAATTGATATGATGATAGAAGAGGATTTTTGTGTAGAGGATGAAGGGTGGAAGAAAAATGTTGAGCAGATAAGGAATATGGCTGGTGAGCTTGAGTTTGCTATCTTTAGTATTCTAGTGGAGGAATTTTCAGAGGAATTAGTATGTTAA 1404 0.3604 MAQKYLHELLKEDQEPFFLNNYISDKRNQMKITTTLQLNKKPINSKFNINLCNKNTSCFFSFPQTPDFKKSPLFELTSPVKSPCKIPSRTATLLLEAALRIQKHSSSSSSNYKTKNKGFGLFGSLFKKLKQRNHNHKLEIETENVSVKDLFKWDSSVKRREKVVSQKENEDKSLEMEMETSCSGYSEGIIQEACACYNRAFSESPFRFVLQTSPCSGSHTPELASPSRHITEDKESNEGEILNQFKSGEEEEEDKEQCSPVCVLDPPFNDDDEGHINDEDEDDDGGDFDLESSYAIVQRARQQILYKLSRFEKLAELDPLELEKRMIEEEEDEDETYMEEDEEMDDVSCEQNDFKHLVFEAVYLSMVQDRQKIPQEFKKLISDLILEEEREFNSLEERDIVVTKICKRLESWKEVESNTIDMMIEEDFCVEDEGWKKNVEQIRNMAGELEFAIFSILVEEFSEELVC 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04430 467 Coils Coil 320 340 - -
Trre13g04430 467 PANTHER OS04G0572500 PROTEIN 1 465 - -
Trre13g04430 467 MobiDBLite consensus disorder prediction 217 289 - -
Trre13g04430 467 MobiDBLite consensus disorder prediction 272 289 - -
Trre13g04430 467 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04430 Trre-Chr13 51848843 51851834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04430 3 466 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 32.544 2.05e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04430 - - cam:101499859 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04430 13 51848843 51851834 Trre13g04430 13 51848843 51851834 ECH
Trre13g04430 13 51848843 51851834 Trre1g02430 1 19649381 19655542 PCT