Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04426 ATGTCTGAAAACCCTACAACTTATGCATCCTCATCTTCGTCGGGCAAAGTTTCGACTGGTCGCCATCCGGTGTACCGAGGAGTGAGACGTAGGAATAACGGAAAATGGGTATCTGAAATCCGCGAACCTAAAAAGCCAAATAGAATTTGGTTAGGAACATTTCCGACACCTGAAATGGCAGCTATTGCTTATGATGTAGCTTCTCTTGCTCTTAAGGGTAAAAATGCTGAATTAAACTTCCCTAATTCTTCTTCTTCTTTGCCAGTGCCTGAGTCTTCCTCTGCTCGCGATATTCAGACAGCTGCAGCAAGTGCTGCAGCTGCTGTAGGCGCAGCAGAGGATGCACTCGCAAGTAATATCAGTGAGGGAAATAATCATCGTGCGGCAATGGCACCGCATGAACTTTTCGCAAGTGCGAACGAGAACAACAATGTTAACTATGAGTTTGTTGATGAGGATTTAATATTTGATATGCCTAATGTTTTGGTTAATATGGCTGAAGGAATGCTACTCAGTCCTCCTCGTTTTGATTTTGCAAGTAATGAGTATGATGCACAAGAAAATGTTATATGTGGCGATGATTCAAACCTTTGGAGTTATCCTTATTTCCCATAA 615 0.4244 MSENPTTYASSSSSGKVSTGRHPVYRGVRRRNNGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVASLALKGKNAELNFPNSSSSLPVPESSSARDIQTAAASAAAAVGAAEDALASNISEGNNHRAAMAPHELFASANENNNVNYEFVDEDLIFDMPNVLVNMAEGMLLSPPRFDFASNEYDAQENVICGDDSNLWSYPYFP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04426 204 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Trre13g04426 204 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Trre13g04426 204 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Trre13g04426 204 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 200 IPR045277 GO:0003700
Trre13g04426 204 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 MobiDBLite consensus disorder prediction 1 19 - -
Trre13g04426 204 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Trre13g04426 204 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04426 Trre-Chr13 51805845 51806459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04426 14 201 AP2-EREBP Transcription Factor Family AT2G36450 61.905 1.44e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre13g04426 AP2 9.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04426 - - gmx:100799620 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04426 13 51805845 51806459 Trre13g04426 13 51805845 51806459 ECH