Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04425 ATGGATATGGAAGACCATAATCATCATCATCATCAACAACATCACCATGAACAGCATCAACAACAACAACAACAACACTATGTTAATGTTACTAGTAACACTAACAGTATCACTGATTTCAGACAACTCATGAATATTGGACAAAGAACAACAACAACAACATCAACAACAACAGATCATTTTCCTACGGCGGAGTTATTCCCCTCCGCCGGCAACAACCCAAATCTGACAATGACACCAGCACATCAACAACAACACTATGAGATGATGATGTTTGGTCGCCAAGTATCTGATATAATGCCTCGCTCATTTCATGACTTTGTTTCAACAGATTCTGCTGCAGCTATTGCCACCGCCACCGCCACAGCCACAACCAGTGCTTCAACTCCTACTCTTAGTGGTAATTTAGAAGCTGAAACAACAACGGGTTGTTTAGGTATTGTTGATGCTTCAAATGGAAGATGGCCTAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAGGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAAACAAAAGAAGGAAAAGCAGGAAGACAAGATGGAAAACATTATAGATTCTTTCGTCAACTTGAAGCCTTATATGGTCAAAACAATAACCCCTCTTCATCTTCACTCCCAGAAAACAATTTTTGTACCAACAACAATCAAGATATGTTTCATTCTCAAAACAAACATTGTGATAGCCTCAGCCTCACAAACTCCACTGAATTCGACACATCGTCGTCCGATAACGATGATCATAATAATGAAAGCTCGATCGAGAAGAGAAAAAAGAAGATGAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGATTTCATTGATTCGCAAATGAAGAAGTTGGTGGCGAAGCAAGAGGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAGGAAAGAGTGTTAAGAGAAGAAGAATGGAGGAAACAAGAGAAAGAAAGGTTAGAAAAAGAGCACAAATTTTGGGCTAAAGAAAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCTTTGCATAAATTTAAAGGAAATGATGAGATAATAAATACTCAATCTTCTTCTCATGATGTCAACAAAAAAAGAAAAGAAAACTCAAGAAGTTGTTTTTACTTTGATAATAACAACAATGTTGATAGGTCTTGTTTGTATAATAACAATGGAGGAGGTTCCTATTGTGGTGATGTTAATGATCAAAGGGAAGAACTTGGAAGAGTAGTAAGAAATGATGGTTCAAATTCTAGTAATGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTGTTGATGAGTGATGGAGGAAATTTATGGGAGAATTACAGCTTAAAGGTTAATAAAGCAAATCAAAACCAGTGA 1506 0.3705 MDMEDHNHHHHQQHHHEQHQQQQQQHYVNVTSNTNSITDFRQLMNIGQRTTTTTSTTTDHFPTAELFPSAGNNPNLTMTPAHQQQHYEMMMFGRQVSDIMPRSFHDFVSTDSAAAIATATATATTSASTPTLSGNLEAETTTGCLGIVDASNGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGQNNNPSSSSLPENNFCTNNNQDMFHSQNKHCDSLSLTNSTEFDTSSSDNDDHNNESSIEKRKKKMSGRSFWKVKIKDFIDSQMKKLVAKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALHKFKGNDEIINTQSSSHDVNKKRKENSRSCFYFDNNNNVDRSCLYNNNGGGSYCGDVNDQREELGRVVRNDGSNSSNVVVAAENCFPLLMSDGGNLWENYSLKVNKANQNQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04425 501 Gene3D - 155 217 - -
Trre13g04425 501 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g04425 501 ProSiteProfiles Myb-like domain profile. 147 212 IPR001005 -
Trre13g04425 501 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g04425 501 MobiDBLite consensus disorder prediction 244 263 - -
Trre13g04425 501 Pfam Myb/SANT-like DNA-binding domain 154 240 IPR044822 -
Trre13g04425 501 Coils Coil 329 356 - -
Trre13g04425 501 MobiDBLite consensus disorder prediction 281 303 - -
Trre13g04425 501 MobiDBLite consensus disorder prediction 287 303 - -
Trre13g04425 501 CDD GT1 154 219 - -
Trre13g04425 501 PANTHER FI21293P1 90 396 - -
Trre13g04425 501 FunFam trihelix transcription factor PTL-like 155 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04425 Trre-Chr13 51780598 51783077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04425 409 496 Trihelix Transcription Factor Family AT5G03680 36.364 5.22e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g04425 Myb_DNA-bind_4 6.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04425 - - psat:127125684 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04425 13 51780598 51783077 Trre13g04425 13 51780598 51783077 ECH
Trre13g04425 13 51780598 51783077 Trre1g02438 1 19693162 19697028 PCT