Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04418 ATGGAGAGCACTCGTAGATCGCTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCAAATCCAACTGCACGACCGTTTTCTCAACGGCAAGGTGGTTCTGGTGTTGCTTCGATGTTGTCATCTGGTAGGTTTCGAATGAATGATAGAGACTCCGATAGTAGTGATGGTGGTGGTGGTTATCATCCACAGCCACCGCCGCATCAAGAACTTGTGACTCAGTATAAGGCTGCTCTTGCTGAACTTACTTTCAACTCGAAACCTATGATCACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGACTACCCGAGGTATACTGCAATACATACAGGCAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTTTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCCGCCCTTAGAAGTGATTCTCAGTCTCAACGCCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGTAGGACTAAGGGAGTATTTAATGATATGAGTGGAGTTATTTCAAACTCAAATGAGGACCCAGATAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTACTCAGAGAGATGCATTTAATGATTCTGTTCCTGACAAGAGCATTGGCGGTGCCTACGGAGATAATGAATATAATTCTAGTCTTTCCAATAATTTGGGCTCTGGTGTTGGAAGAACTGGAAATAGGCTCATTGGCGGTGTTGCAGAGACCTTATCAGGGCAAAGAAGTGGTTTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCACCGAAACCTATGAATTTGGATGCACATAACATCAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACTCTGGTTTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAGCTCAGACCAGTGGATGGCCGATGATGATAATTTGGAAAGTGAAGATCACCTACAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATACCCATTGTTAAGAAACAACTACCATCATCCGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTGGCAAATTGAATATGAAGTCGGGTCACTCAGAAATATCTGTTTCTGCTCCTAGTGTCTTACCTAAAAGTTCAAATTCTTTGGCTGCGAAGATGAGGAATCAGTCTTCTATGCCGCATACAACCATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGAGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACAACAGTCTCTATCAGTGCCAGTAACAGCACATCACCCTCCTTCAAGTCAATATATTAGAGATCCCACACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCACAAGAAAAGGACATGCGGGGTCCATTATCTTCGGCAACCTCTTTCCAGCCAAAACCTCAGCAACGGCAGCTGGGCCCTTCACAGGCTGAAGTCACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCACAGCCACTTCTGAAAAGTCAACCACAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCAAACAAATCAATTACCCGAAGTCTGGATGCAAGTAATCGTACATCTCAACCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTACCACATCAGTTTCTCCGGGTTCTTCAACAGTGTCATTAGGTTCTCCAAATGATTATCCACAGACTTTGCCAAAACTACTTCAAGGGAAGGCTGTAAAAAAGCAAAAGGATTCTAATCAACCCTCTGCTCCCTCTAATGAACGCGGCGCAACAGCTCCGAGCTCAAATGTCGCCAATAAGAATACCTTATATCCAATTTCAAATCTTTTAAGCTCTTTAGTTGCCAAAGGTTTGATATCTGCAGGAGCGGAGTCAGCAACTGTATTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGCAAGCATTACTGCCAGTTCCTCTTTGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGGTAAAATCTTCCAGAGATGAGACGGATGCTGCTGCAAAAGCCTCACTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATATCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGTTGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAGTGGTCCAACTGGAGCATCAAGAGGATGGTATGTTAAGTCAGAGGACTGGATTGCTGGCAAGGCCAAATATCTATCCGAGTCTGAATTTACCGATTCGGCCGATGAATATGATGATAAAATTGCAGAGGACAGTCAATTGGATTCTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTGCTGTGTGGAGAGCTATTTGAAGATGTATATTGTCAGGAAAGGGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGTGATAGTGAGATGGAAAGTATAAATTTGGGTCCCATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCTGGTGTGACCAATACAGAACATGATTAG 3006 0.4371 MESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGSGVASMLSSGRFRMNDRDSDSSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPMITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASAALRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNDMSGVISNSNEDPDRPDRALGAARPWLDPRINMHNNQRTQRDAFNDSVPDKSIGGAYGDNEYNSSLSNNLGSGVGRTGNRLIGGVAETLSGQRSGFSLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGLPDHVPNVSSNLSSDQWMADDDNLESEDHLQITHPIGRKVDKEIPIVKKQLPSSGGHPSLSWELQKQIPSGKLNMKSGHSEISVSAPSVLPKSSNSLAAKMRNQSSMPHTTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVPVTAHHPPSSQYIRDPTPAIGPNVQVGNFRKSQEKDMRGPLSSATSFQPKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKATATSEKSTTKSLPAPSVKSGIIPNKSITRSLDASNRTSQPGVKPTRSVGPSPTTSVSPGSSTVSLGSPNDYPQTLPKLLQGKAVKKQKDSNQPSAPSNERGATAPSSNVANKNTLYPISNLLSSLVAKGLISAGAESATVLPSEMVMRSKDQTASITASSSLPVASAPDSAAVPVKSSRDETDAAAKASLALSQSTSTEIRNIIGFDFKPDVIREMHPHVITELLVELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQSGPTGASRGWYVKSEDWIAGKAKYLSESEFTDSADEYDDKIAEDSQLDSMVVADENQCLCVLCGELFEDVYCQERDQWMFKGAVYLNNSDSDSEMESINLGPIIHARCLSENSISGVTNTEHD 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04418 1001 ProSitePatterns Zinc finger C2H2 type domain signature. 851 871 IPR013087 -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 577 601 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g04418 1001 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Trre13g04418 1001 CDD CID_Pcf11 81 193 IPR047415 -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 467 486 - -
Trre13g04418 1001 SMART 558neu5 79 201 IPR006569 -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 213 276 - -
Trre13g04418 1001 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 991 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre13g04418 1001 MobiDBLite consensus disorder prediction 615 693 - -
Trre13g04418 1001 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 520 545 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 213 228 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 1 77 - -
Trre13g04418 1001 Pfam CID domain 85 194 IPR006569 -
Trre13g04418 1001 Gene3D - 73 201 IPR008942 -
Trre13g04418 1001 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 704 730 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 25 47 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 237 262 - -
Trre13g04418 1001 MobiDBLite consensus disorder prediction 517 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04418 Trre-Chr13 51739571 51745275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04418 823 989 C2H2 Transcription Factor Family AT4G04885 37.427 8.00e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04418 K14400 - gmx:100788958 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04418 13 51739571 51745275 Trre13g04418 13 51739571 51745275 ECH