Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04417 ATGGATATGGAGAGCACTCGTAGATCGCTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCAAATCCAACTGCACGACCGTTTTCTCAACGGCAAGGTGGTTCTGGTGTTGCTTCGATGTTGTCATCTGGTAGGTTTCGAATGAATGATAGAGACTCCGATAGTAGTGATGGTGGTGGTGGTTATCATCCACAGCCACCGCCGCATCAAGAACTTGTGACTCAGTATAAGGCTGCTCTTGCTGAACTTACTTTCAACTCGAAACCTATGATCACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGACTACCCGAGGTATACTGCAATACATACAGGCAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTTTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCCGCCCTTAGAAGTGATTCTCAGTCTCAACGCCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGTAGGACTAAGGGAGTATTTAATGATATGAGTGGAGTTATTTCAAACTCAAATGAGGACCCAGATAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTACTCAGAGAGATGCATTTAATGATTCTGTTCCTGACAAGAGCATTGGCGGTGCCTACGGAGATAATGAATATAATTCTAGTCTTTCCAATAATTTGGGCTCTGGTGTTGGAAGAACTGGAAATAGGCTCATTGGCGGTGTTGCAGAGACCTTATCAGGGCAAAGAAGTGGTTTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCACCGAAACCTATGAATTTGGATGCACATAACATCAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACTCTGGTTTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAGCTCAGACCAGTGGATGGCCGATGATGATAATTTGGAAAGTGAAGATCACCTACAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATACCCATTGTTAAGAAACAACTACCATCATCCGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTGGCAAATTGAATATGAAGTCGGGTCACTCAGAAATATCTGTTTCTGCTCCTAGTGTCTTACCTAAAAGTTCAAATTCTTTGGCTGCGAAGATGAGGAATCAGTCTTCTATGCCGCATACAACCATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGAGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACAACAGTCTCTATCAGTGCCAGTAACAGCACATCACCCTCCTTCAAGTCAATATATTAGAGATCCCACACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCACAAGAAAAGGACATGCGGGGTCCATTATCTTCGGCAACCTCTTTCCAGCCAAAACCTCAGCAACGGCAGCTGGGCCCTTCACAGGCTGAAGTCACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCACAGCCACTTCTGAAAAGTCAACCACAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCAAACAAATCAATTACCCGAAGTCTGGATGCAAGTAATCGTACATCTCAACCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTACCACATCAGTTTCTCCGGGTTCTTCAACAGTGTCATTAGGTTCTCCAAATGATTATCCACAGACTTTGCCAAAACTACTTCAAGGGAAGGCTGTAAAAAAGCAAAAGGATTCTAATCAACCCTCTGCTCCCTCTAATGAACGCGGCGCAACAGCTCCGAGCTCAAATGTCGCCAATAAGAATACCTTATATCCAATTTCAAATCTTTTAAGCTCTTTAGTTGCCAAAGGTTTGATATCTGCAGGAGCGGAGTCAGCAACTGTATTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGCAAGCATTACTGCCAGTTCCTCTTTGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGGTAAAATCTTCCAGAGATGAGACGGATGCTGCTGCAAAAGCCTCACTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATATCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGTTGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAGTGGTCCAACTGGAGCATCAAGAGGATGGTATGTTAAGTCAGAGGACTGGATTGCTGGCAAGGCCAAATATCTATCCGAGTCTGAATTTACCGATTCGGCCGATGAATATGATGATAAAATTGCAGAGGACAGTCAATTGGATTCTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTGCTGTGTGGAGAGCTATTTGAAGATGTATATTGTCAGGAAAGGGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGTGATAGTGAGATGGAAAGTATAAATTTGGGTCCCATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCTGGTGTGACCAATACAGTAAGGCTCATAGTGTATTGA 3021 0.4369 MDMESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGSGVASMLSSGRFRMNDRDSDSSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPMITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASAALRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNDMSGVISNSNEDPDRPDRALGAARPWLDPRINMHNNQRTQRDAFNDSVPDKSIGGAYGDNEYNSSLSNNLGSGVGRTGNRLIGGVAETLSGQRSGFSLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGLPDHVPNVSSNLSSDQWMADDDNLESEDHLQITHPIGRKVDKEIPIVKKQLPSSGGHPSLSWELQKQIPSGKLNMKSGHSEISVSAPSVLPKSSNSLAAKMRNQSSMPHTTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVPVTAHHPPSSQYIRDPTPAIGPNVQVGNFRKSQEKDMRGPLSSATSFQPKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKATATSEKSTTKSLPAPSVKSGIIPNKSITRSLDASNRTSQPGVKPTRSVGPSPTTSVSPGSSTVSLGSPNDYPQTLPKLLQGKAVKKQKDSNQPSAPSNERGATAPSSNVANKNTLYPISNLLSSLVAKGLISAGAESATVLPSEMVMRSKDQTASITASSSLPVASAPDSAAVPVKSSRDETDAAAKASLALSQSTSTEIRNIIGFDFKPDVIREMHPHVITELLVELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQSGPTGASRGWYVKSEDWIAGKAKYLSESEFTDSADEYDDKIAEDSQLDSMVVADENQCLCVLCGELFEDVYCQERDQWMFKGAVYLNNSDSDSEMESINLGPIIHARCLSENSISGVTNTVRLIVY 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04417 1006 MobiDBLite consensus disorder prediction 1 79 - -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 522 547 - -
Trre13g04417 1006 Pfam CID domain 87 196 IPR006569 -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g04417 1006 ProSitePatterns Zinc finger C2H2 type domain signature. 853 873 IPR013087 -
Trre13g04417 1006 SUPERFAMILY ENTH/VHS domain 78 206 IPR008942 -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 215 230 - -
Trre13g04417 1006 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 993 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre13g04417 1006 MobiDBLite consensus disorder prediction 706 732 - -
Trre13g04417 1006 SMART 558neu5 81 203 IPR006569 -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 27 49 - -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 519 732 - -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 239 264 - -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 579 603 - -
Trre13g04417 1006 CDD CID_Pcf11 83 195 IPR047415 -
Trre13g04417 1006 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 469 488 - -
Trre13g04417 1006 Gene3D - 75 203 IPR008942 -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 215 278 - -
Trre13g04417 1006 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Trre13g04417 1006 MobiDBLite consensus disorder prediction 617 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04417 Trre-Chr13 51739565 51745162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04417 825 991 C2H2 Transcription Factor Family AT4G04885 37.427 7.22e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04417 K14400 - gmx:100788958 1161.75