Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04414 ATGAAGTTTTGGGGTGTTGAGGTTAAAAGCGGAGAATCACTCAAGGTTGAGCCAGAAGATGACAGAATTATCCACCTTTCCTTGGCATGTCTGGGGGATGTCACCAAGGATAAAAGGGGTGAACCAGTTTCCCTTTATGTGAAGATTGATGATCATAAGCTTCAACTTGGAACACTTTCTTCAGAAAAAATTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGGAGCGTCTTCTTTACTGGATTTAAAATGGAATCTGTGGCTTCTGATGATGATGAAGATTCTGATGATTTTATTGAGGAAGATAATCCAGTTAATGCTGCTAATGGGAAACCCGAGTTTGAGGTTAAGAATGGTGCCAAACCTGGTGTAAATGAAGCTCAACAAAACAGGACATCAGATCCAAAAAAGAATCAGAAGGATGTTGAAAATGATGTTAGTGCTGACGATGAAGAAGATTCATCTGATTCTGGCTCTGATGAGGATTCTAGTGAAGATGAGCCCATGGTGAATGGTCAAATTGAAAGTAGTGAAGATGACGACGATAGTGATTCTGATGATGAAGATTCTGATGATGAGGAGACACCGAAGAAGACTGAAGGAAGCAACAAGAGGGTTGCTGAATCTTCCAAGAAAACACCTGTACCTGTGAAGAAAGCAAAATTTGATACTCCAGAGAAGACTGGTAGCAAGAATGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTGGTAAACCAGGTGCAAGTAACAAGCAGCCAGTGAAGCAGCAGACTCCACAGTCAACTGGAGATTACAGCTGTAAACCTTGCAAAAAGACATTTAAGACTGAAGATGCCTTAGGTTCTCATAATAAGGCCAAGCACAGTGCCAAATGA 912 0.409 MKFWGVEVKSGESLKVEPEDDRIIHLSLACLGDVTKDKRGEPVSLYVKIDDHKLQLGTLSSEKIPQISYDLVFEKEFELSHNWKYGSVFFTGFKMESVASDDDEDSDDFIEEDNPVNAANGKPEFEVKNGAKPGVNEAQQNRTSDPKKNQKDVENDVSADDEEDSSDSGSDEDSSEDEPMVNGQIESSEDDDDSDSDDEDSDDEETPKKTEGSNKRVAESSKKTPVPVKKAKFDTPEKTGSKNGVHVDTPYPKQAGKPGASNKQPVKQQTPQSTGDYSCKPCKKTFKTEDALGSHNKAKHSAK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04414 303 ProSitePatterns Zinc finger C2H2 type domain signature. 279 300 IPR013087 -
Trre13g04414 303 MobiDBLite consensus disorder prediction 261 279 - -
Trre13g04414 303 MobiDBLite consensus disorder prediction 206 241 - -
Trre13g04414 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 303 IPR013087 -
Trre13g04414 303 MobiDBLite consensus disorder prediction 100 282 - -
Trre13g04414 303 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Trre13g04414 303 MobiDBLite consensus disorder prediction 156 205 - -
Trre13g04414 303 Pfam C2H2-type zinc finger 277 301 - -
Trre13g04414 303 FunFam Histone deacetylase HDT1 1 99 - -
Trre13g04414 303 Gene3D Nucleoplasmin core domain 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04414 Trre-Chr13 51707859 51712171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04414 1 302 C2H2 Transcription Factor Family AT5G03740 41.042 3.33e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g04414 NPL 9.5e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04414 - - ccaj:109796568 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04414 13 51707859 51712171 Trre13g04414 13 51707859 51712171 ECH